Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq21 100 5e-16 >seq21 Length=203625132 Score = 100 bits (110), Expect = 5e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| | ||||||||| || || ||||||||||| |||||||||||| | | |||| Sbjct 200398399 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 200398458 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| ||| |||| ||| ||||||| || | |||||| ||| Sbjct 200398459 TCCTCCTTCCCGGTGTTCTTCTTCAAATCCAGAAACTCAAAGATATCCAAGTGCCACGGC 200398518 Query 245123 TCCATGTA 245130 |||| ||| Sbjct 200398519 TCCAGGTA 200398526 Score = 96.9 bits (106), Expect = 7e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTG-GGCCAGCTT 244380 || ||||||||||| | |||||| || ||| || || || | || || ||| |||| Sbjct 200394682 CCTTTGCTGACGGGACAGCCCTCATACGTCTCATACGGCCCTT-GCTCTTTGGCGAGCTC 200394740 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCG 244440 ||||| | || | ||| ||||||| || ||||| || ||| || ||||| | | Sbjct 200394741 GCAGCTGGCCTCCAAAGCGCCGTAGTAAATAGTCTCAAAAATCTGCTGGTTCAGGAGCTG 200394800 Query 244441 GGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500 ||||| | |||||| | ||||| |||||| |||| ||||| || || || Sbjct 200394801 GGCCTCAGGACTCTCAAAGGGGTATCTCATCAGAATGAAGGCGTCTGCCAGGCCTTGTAC 200394860 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 |||||||||||||| | ||| ||| | ||||||||| Sbjct 200394861 ACCGATGCCGATGGGGCGGTGGCGCATATTGGAGCGC 200394897 Score = 96.9 bits (106), Expect = 7e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| || | ||||||||| || || || ||||| ||||| ||||||||||||| Sbjct 200397159 CCACCTCATCTTTGCTGGTGTACTCCACTATTTCCGTGCACAGGTTGCTGCACTTGATGG 200397218 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| ||| || | ||||||||| ||||| | || Sbjct 200397219 TGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTACAAGAGTCCTTGTACAGCATATAAGGGG 200397278 Query 244824 CCCCGGTCTCGAGCTGGG 244841 |||||||| ||||| Sbjct 200397279 TACCGGTCTCAGTCTGGG 200397296 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 ||||||||||||||| || || || ||||| ||||| ||| ||| | |||||||| Sbjct 200389013 CACCTGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGAT 200389072 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 | || | ||||||| ||||| |||||| ||||| ||||| || || | |||| Sbjct 200389073 GGATTCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGGAGAAAGGAGCAA 200389132 Query 244216 ACTGTTCCTCACGCCGTGCCT 244236 |||||||| || |||| ||| Sbjct 200389133 GCTGTTCCTAACACCGTACCT 200389153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338373703200