Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq36 91.5 1e-13 seq41 82.4 6e-11 seq33 82.4 6e-11 seq29 82.4 6e-11 >seq36 Length=28007247 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||| |||||||||||||| || ||| ||||||||| |||||||| || | | Sbjct 6677297 CCACCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 6677356 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| |||||||| ||||| ||||| | |||||| || || Sbjct 6677357 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 6677416 Query 34021 ACGCTCTCTTTGTCC 34035 | || |||||||||| Sbjct 6677417 ATGCCCTCTTTGTCC 6677431 >seq41 Length=19343079 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| | || | | |||||| Sbjct 4164330 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCGACCAAAGGAA 4164271 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 4164270 CCATAACTGATTTAATGAGCCATTCG 4164245 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| | || | | |||||| Sbjct 4164330 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCGACCAAAGGAA 4164271 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 4164270 CCATAACTGATTTAATGAGCCATTCG 4164245 >seq33 Length=109106476 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| | || | | |||||| Sbjct 49722575 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCGACCAAAGGAA 49722634 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 49722635 CCATAACTGATTTAATGAGCCATTCG 49722660 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| | || | | |||||| Sbjct 49722575 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCGACCAAAGGAA 49722634 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 49722635 CCATAACTGATTTAATGAGCCATTCG 49722660 >seq29 Length=37982970 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| | || | | |||||| Sbjct 31774607 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCGACCAAAGGAA 31774666 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 31774667 CCATAACTGATTTAATGAGCCATTCG 31774692 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| | || | | |||||| Sbjct 31774607 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCGACCAAAGGAA 31774666 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 31774667 CCATAACTGATTTAATGAGCCATTCG 31774692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062061256140