Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq36 132 5e-26 seq58 89.7 6e-13 seq46 86.0 7e-12 >seq36 Length=28007247 Score = 132 bits (146), Expect = 5e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| ||||| ||| |||||| || || ||||| || | ||| || || | Sbjct 6677309 CGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 6677368 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| ||||| || || || | ||||||||| | || | || ||| ||| Sbjct 6677369 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCTTTG 6677428 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || ||| | || | | ||||| || | ||||| |||| |||||| Sbjct 6677429 TCCTGGATCTTGGCTTTTACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATG 6677488 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || |||||||| || |||||||||||||| ||||| || || Sbjct 6677489 GTCTTGCCCGTCAGGGTCTTTACAAAGATCTGCATCTTTAC 6677529 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 6681076 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 6681135 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 6681136 TATACTAACGAGGA 6681149 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || | |||||||||||||||||| ||||||||||| | ||||||||||||| Sbjct 22334405 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCTGCGTGACAGGCAGGGATACTCACCACTA 22334464 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 22334465 TACTAACGAGGA 22334476 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 6683253 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 6683312 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 6683313 TACTAACGAGGA 6683324 >seq58 Length=131974632 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 19487596 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 19487537 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 19487536 TACTAACGAGGA 19487525 >seq46 Length=143779068 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 55643631 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 55643572 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 55643571 TACTAACGAGGAGTG 55643557 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 57211013 TTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 57210954 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 57210953 CTATACTAACGAGGA 57210939 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 57211937 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 57211996 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 57211997 TACTAACGAGGA 57212008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212324688800