Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq40 123 4e-23 seq22 116 5e-21 >seq40 Length=20244435 Score = 123 bits (136), Expect = 4e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||||||||||||||| ||||||||| | |||||||||||| |||| ||| ||||| Sbjct 17400536 CCGCCGAAGGTGCTGGGCTTCCAGTACTCGGGGGAGCAGATGGGGTTCCCCAGCAGCCCC 17400477 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 || | ||| || || ||||| | ||| | |||||||| ||||||||||| || || Sbjct 17400476 TTGAGGGAGAAGGGGGCCCCGATCTCCACCATGCTCTCCCCGAAGATGGCGTTGGCTTGC 17400417 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 || || || | | | || | ||||| || | || |||| |||||| || || | Sbjct 17400416 GGCTTCTCCAGCAGCAGCCCCGGGTAGAACTCCAGGGCGTCGATGTCGCCGTACAGCTCC 17400357 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| || || || |||||| ||| ||| || Sbjct 17400356 TCCAGCTGCGCCGCCTTCTCCTCCTCTCCTGCA 17400324 Score = 89.7 bits (98), Expect = 7e-13 Identities = 166/243 (68%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 9730 AGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACA 9789 || || || || || || | ||||||||| | |||| |||||| || || || || | Sbjct 17398830 AGCCGGGTCGTCTGGAAGAGCTGCTCGTCGCTCCATGTCGGGTGCTCCTGCTTCAGCAGG 17398771 Query 9790 TCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACT 9849 |||||||| | |||||| || | ||||| | ||| ||||||||||| | || |||| Sbjct 17398770 TCGCAGACGCGGTTGTGCTCGCGGAGCCAGAGGGTCGCGTACATCATCAGCCCGGGCAGG 17398711 Query 9850 AAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGG----GCACTTCGGGCGC 9905 | || || || || | ||||| || | |||| | || |||| || || ||| Sbjct 17398710 AGCCCGAAGACCTCCTGGCCCACGGCCAGGCGCTGCTCCTCGGCGGTGCCGTTGGGG--- 17398654 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAAC 9965 || | ||| |||||| ||| || || ||||| || |||| || ||||| | || Sbjct 17398653 -TAGATCATGTGCACCGGGGCCTGGAGCACCGTGGGCGGGTACACCTCCCCGTCCACCAC 17398595 Query 9966 CTG 9968 ||| Sbjct 17398594 CTG 17398592 >seq22 Length=66201059 Score = 116 bits (128), Expect = 5e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || ||||| || ||||| || ||| ||||||| || || || || || || | || ||| Sbjct 26664350 GTAGTTTGGAATAACTGTTCATCATCCCATTCTGGATGCTCCTGCTTAAGGATGTCACAG 26664291 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 |||| |||||| || || |||||||| || || |||||||||||||| || || | |||| Sbjct 26664290 ACCCGGTTGTGCTCCCTGAGCCATATAGTAGCATACATCATTAAACCTGGGACCAGACCA 26664231 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 |||||||| | || || | || || || | || || || | || | ||| ||||| Sbjct 26664230 AACACTTCCTGTCCTACAGAGAATCGTAGGTGCTCAGGAACATGAGGAGGATATAGCATT 26664171 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 | | | || || || || | || || |||||||| || |||| Sbjct 26664170 TCTGCTTCAGTATCCTTCACTATTGGAGGGTACATTTCTCCACCAAT 26664124 Score = 107 bits (118), Expect = 3e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 |||||| || || | || ||||||||||| || | || || || || | ||| ||||| Sbjct 26662719 ACCTTTAACACCCATGGGTGTAGGGCAGTCTCGTGCTACTGGTGGAAGGGCTCTTGTATA 26662660 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 |||||| || || ||||| ||||||||||| ||||| ||||| || ||||| || Sbjct 26662659 ATAGGAAAGGTTGGAAAAGGCTTCCCAGCTTTTGTAACCATATTCACTATTGTATGTTGG 26662600 Query 10509 GGGACTGTCAATCATCTCGGACCTGGCTA 10537 |||||||||||||| | ||||| |||| Sbjct 26662599 GGGACTGTCAATCAAATGTGACCTTGCTA 26662571 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/159 (72%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 9568 TGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAA--GGCGG 9625 |||||| |||| || || ||||| || || || |||| ||||||||||||||| || Sbjct 26665412 TGCCAGTGGTACAGAGTGTTGAATTCAGCTGCAATTCTGTTCTGGTACTGAAACTTTTGG 26665353 Query 9626 TACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGA 9685 | ||||| | ||| || ||||| | |||| ||| ||||| ||||| | || || | Sbjct 26665352 T--TAAACAGAAGCTCAGGATCAAACTTCAGCTTGAAATGGTAGCCGCTCAAGTGTTGCA 26665295 Query 9686 CATACTGTGTGATTATAATGTTAATGGTTTCCCCGGTAA 9724 |||| | | || | ||| || ||||| ||||| |||| Sbjct 26665294 CATAGTCTTCAATAACAATCTTGATGGTCTCCCCTGTAA 26665256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723727366738000