Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq36 167 2e-36 seq47 138 1e-27 >seq36 Length=28007247 Score = 167 bits (184), Expect = 2e-36 Identities = 176/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || ||||| || || |||||||| ||||||||| |||| || ||| | Sbjct 6677527 AAAGATGCAGATCTTTGTAAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCC 6677468 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || |||| | | | | | |||| || |||| ||||||||||| |||||| | || Sbjct 6677467 CAGTGACACCATTGAGAATGTAAAAGCCAAGATCCAGGACAAAGAGGGCATTCCCCCTGA 6677408 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || ||||| |||||||| || | |||||||| |||||| Sbjct 6677407 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTA 6677348 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || |||||| |||||||||| |||| || ||| Sbjct 6677347 CAACATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTGAGGGGTGGC 6677296 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| ||||||||| |||| || ||| ||| Sbjct 6676618 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 6676559 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| |||||||| || |||||| | ||||| Sbjct 6676558 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCA 6676500 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 6676499 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 6676440 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||||||||| |||| || || Sbjct 6676439 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGG 6676392 >seq47 Length=18085138 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || ||||| ||||||||| | || || ||| || Sbjct 16075472 AATATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 16075413 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| |||||||| || |||||| | ||| Sbjct 16075412 AGTGACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGAC 16075353 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| |||||||| || | |||||||| |||||| Sbjct 16075352 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTAC 16075293 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| |||||| | || ||||| ||||||||||| | || || ||| Sbjct 16075292 AACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTCAGGGGTGGC 16075242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172362348800