Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq51 102 6e-16 seq67 89.7 4e-12 >seq51 Length=12259890 Score = 102 bits (112), Expect = 6e-16 Identities = 354/544 (65%), Gaps = 10/544 (2%) Strand=Plus/Minus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| || ||||||||||||||||| | | | || || | ||| |||||||| Sbjct 8339062 GCACCATAAGCTACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 8339003 Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 || | | || |||| ||| | ||| || || |||| || || ||||| |||||||| Sbjct 8339002 AAGTCTTGTAGGAGTT-TCTGAATCTTTGGGATGCGAGTGGACCCACCAACCAATACAAT 8338944 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | ||| ||||| || || || | |||| || | || || || || || || Sbjct 8338943 GTCATGGATCTGGGATTTGTCGAGCTTGGCATCCCGCAAGGCCTTCTCCACAGGGTCCAG 8338884 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT- 517847 | | | |||| || | | ||||| || ||||| || || ||| | Sbjct 8338883 AGTACCACGGAACAGATCAGCGTTCAACTCTTCAAAGCGAGCTCGGGT--GATTGAGGTG 8338826 Query 517848 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 517906 || || ||||| || || | | |||||||| ||||| | | || || ||| || Sbjct 8338825 TAGAAGTCAATGCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGCGTGCTAGAGGAG 8338766 Query 517907 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG--CTTTTGCTGATT 517964 || | ||| || ||||||||||||||||| | || | || | | || ||| | || Sbjct 8338765 AGGGTACGCTTTGCACGTTCACATGCTGTGCGGAGACGGCGAACTGCTCTCTTGTT--TT 8338708 Query 517965 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGAT 518024 | | | ||| | || | || | |||||| || ||| | | || | | | Sbjct 8338707 CACTGATGTCTTTCTTGTGCTTGCGCTTGAACTCAGCAATGAAGTGGTTGACCATTCTGT 8338648 Query 518025 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 518084 ||||||| ||||| || |||| | |||| |||| || | | |||| || | | Sbjct 8338647 TATCAAAGTCTTCTCCACCCAGGTGGGTATCACCTGCAGTGGACTTCACTTCAAAGATAC 8338588 Query 518085 CATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 518144 ||||||||| | | | || ||||| ||| |||||||||| ||||| || | | Sbjct 8338587 CATCTTCAATTGTGAGGATAGACACATCGAAGGTGCCACCACCCAGGTCAAAGATCAAAA 8338528 Query 518145 CATT 518148 |||| Sbjct 8338527 CATT 8338524 Score = 89.7 bits (98), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||| ||||||||||| || |||| | || Sbjct 8338366 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCTGTTGGTTCATTGATGATTCGGAGTACG 8338307 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||| || || | || |||||||| ||||| || | || || || || || || Sbjct 8338306 TTGAGACCTGCGATAGTACCAGCATCTTTTGTGGCCTGGCGCTGGGAGTCATTGAAGTAG 8338247 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 || || ||||| | || |||| ||| || Sbjct 8338246 GCTGGTACAGTGACCACAGCATTAGTAAC 8338218 >seq67 Length=916652 Score = 89.7 bits (98), Expect = 4e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || || | || ||||| |||||||| |||||| | ||| | | ||||| Sbjct 200057 TGTTGTTGCTACTGTGGCTTTTGGAATGGGTATCAATAAAGCAGATATCCGGAGAGTTAT 200116 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 |||||||||||| || ||| | || ||| || |||||||||||||| ||||| || || Sbjct 200117 TCATTATGGAGCCCCTAAGGAAATGGAATCATACTATCAAGAAATTGGAAGAGCTGGCCG 200176 Query 367113 TGATGGA 367119 ||| ||| Sbjct 200177 TGACGGA 200183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780818926369420