Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq62 331 1e-85 seq51 185 1e-41 >seq62 Length=117929553 Score = 331 bits (366), Expect = 1e-85 Identities = 824/1238 (67%), Gaps = 30/1238 (2%) Strand=Plus/Plus Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | || ||| || |||| || || ||||| || |||||||||| || | | Sbjct 104770046 GTCATGACGCCGCCCGCCGTCTCGATGCCGAGCGACAGCGGCGTCACGTCCAGCAGCAGC 104770105 Query 6986 AGGTCTTGAACAGATTCGTTCC--CTT--CACCCGTTAAGATGGCGGCTTGGACCGTCGC 7041 ||||| || || ||| ||| ||| | ||| | | |||||||||||| |||| ||| Sbjct 104770106 AGGTCCTGCACG--TTC--TCCGACTTGTCGCCCATGAGGATGGCGGCTTGCACCGCCGC 104770161 Query 7042 CCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATA 7101 ||||| || |||||||| |||||||| || | || ||||| || || ||||| || | Sbjct 104770162 GCCGTACGCCACCGCCTCGTCGGGGTTGATGCTCTTGTTCAGCTCCTTGCCGTTGAAGAA 104770221 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 ||| | || | || || || ||||| || ||||| || || |||| ||||| || Sbjct 104770222 GTCCTGCAGCAGCTTCTGGATCTTGGGGATGCGCGTCGAGCCGCCCACCAGCACGATCTC 104770281 Query 7162 ATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACA 7221 | ||| | | || || | ||| | ||| || || | || || || || |||| Sbjct 104770282 CTGCACCTGCCCCTTGTCCAGCTTGGCGTCGCGCAGCGCCTTCTCCACCGGCTCCAGCGT 104770341 Query 7222 TTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAA 7281 ||||||| ||| ||| ||||| || || || || || ||||| || ||||| Sbjct 104770342 GCCGCGGAACAGGTCGGCGTTCAGCTCCTCGAAGCGCGCCCGCGTGATGGACGTGTAGAA 104770401 Query 7282 ATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA---TAA 7338 || | ||| ||| | | ||| || || || ||| | | || ||| || || | Sbjct 104770402 GTCGATGCCCTCGAACAGCGAGTCGATCTCGATGCTGGCCTG---CGTGGAGGAGCTCAG 104770458 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 ||| ||||| || ||||| |||||||| || | || || | || ||| ||| ||| Sbjct 104770459 CGTGCGCTTGGCCCGCTCGCACGCCGTGCGCAGCCGCCGCACCGCCCGCTTGTTGCCGCC 104770518 Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 || || ||| || || || || ||||| || |||||| | | | || Sbjct 104770519 GATGTCGCGCTTGTGCTTGCGCTTGAACTCCTCCACGAAGTGCGTCACCATGCGGTTGTC 104770578 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 ||| || || || |||| ||| || || ||||| |||| || || || ||||| || | Sbjct 104770579 GAAGTCCTCGCCGCCCAGGTGCGTGTCGCCCGCCGTCGACTTCACCTCGAAGATGCCGTC 104770638 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 || ||| | | | || || || || || || || |||||||| || || || ||||| Sbjct 104770639 CTCGATGGTGAGGATGGACACGTCGAAGGTGCCGCCGCCCAGGTCGAAGATCAGCACGTT 104770698 Query 7579 CGTATCGTCG------TCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 | | ||| || | ||||| || || ||||| ||||| || |||||||| || Sbjct 104770699 CTTCTCGCCGGCGCGCGCGCCCTTCTTGTCCAGCCCGTAGGCGATGGCGGCCGCCGTGGG 104770758 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || || || || | ||| ||||| | || || | |||||||| || || || Sbjct 104770759 CTCGTTGATGATGCGCATCACGTTGAGGCCCGTGATGGTGCCTGCATCTTTGGTAGCCTG 104770818 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || ||||| ||||| |||||||| || || || | ||| |||| | || || || Sbjct 104770819 GCGCTGCGAGTCGTTGAAGTAGGCGGGCACGGTGATGACGGCGTTCTGCACCTTGCGGCC 104770878 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 ||||| | || ||||| || ||||| ||||| || ||||| || |||||||||| Sbjct 104770879 CAGATAAGCCTCAGCGATCTCCTTCATCTTGGTCAGCACCATGGAGCTGATCTCTTCAG- 104770937 Query 7813 CGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC 7871 | | | || || | ||| || ||| | || |||| | | |||| || |||| | Sbjct 104770938 GGAAGAAGGTCTTGGATTCGCCTTTATACTCCACTTGCACCTTGGGCTT-GCCGC--CCT 104770994 Query 7872 CGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACT 7931 || | || | | ||| | ||||| || | || ||| |||| ||| Sbjct 104770995 CGCTCACTACGCGGAAGGGCCAGTGCTTCATGTCCGCCTGCACCGTGGGGTCGTCGTACT 104771054 Query 7932 TTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGT 7991 | | ||||| || ||||| || || || | ||||| ||||||||||||| |||| Sbjct 104771055 TGCGGCCGATGAGGCGCTTGGCGTCGAAGATGGTGTTAGTGGGGTTCATGGCCACCTGGT 104771114 Query 7992 TCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG- 8050 |||| |||||||| ||||| || || || | ||||| || || ||||| | |||| Sbjct 104771115 TCTTGGCCGCGTCGCCGATGAGGCGCTC---CGTGTCCGTGAAGGCCACGTA-GCTGGGC 104771170 Query 8051 GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCG 8110 || || || ||||| ||||| || || || || || || | | | || ||||||| Sbjct 104771171 GTGGTGCGGTTCCCCTGGTCATTGGCGATGATCTCCACCTTGCCATGCTGGAAGACGCCC 104771230 Query 8111 ACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||||| || || || || ||||| || || ||||| || Sbjct 104771231 ACGCAGGAGTAGGTGGTGCCTAAGTCGATGCCGATCGC 104771268 >seq51 Length=12259890 Score = 185 bits (204), Expect = 1e-41 Identities = 359/530 (68%), Gaps = 0/530 (0%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || || || | || ||||| ||||| || || || Sbjct 8339062 GCACCATAAGCTACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 8339003 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | || || | || ||||| || ||||| || || || ||||| ||||| || || Sbjct 8339002 AAGTCTTGTAGGAGTTTCTGAATCTTTGGGATGCGAGTGGACCCACCAACCAATACAATG 8338943 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | ||||| |||| ||| | || || | | || || ||||| |||| | Sbjct 8338942 TCATGGATCTGGGATTTGTCGAGCTTGGCATCCCGCAAGGCCTTCTCCACAGGGTCCAGA 8338883 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| || || || ||||| || || ||||| || || || ||| Sbjct 8338882 GTACCACGGAACAGATCAGCGTTCAACTCTTCAAAGCGAGCTCGGGTGATTGAGGTGTAG 8338823 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| ||| || || | |||||||| ||||| | | || | | || || | Sbjct 8338822 AAGTCAATGCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGCGTGCTAGAGGAGAGG 8338763 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| || ||||| || || || | ||| |||| || | | ||| | Sbjct 8338762 GTACGCTTTGCACGTTCACATGCTGTGCGGAGACGGCGAACTGCTCTCTTGTTTTCACTG 8338703 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || |||||||| || || || || ||||| || |||||| | | ||| ||| Sbjct 8338702 ATGTCTTTCTTGTGCTTGCGCTTGAACTCAGCAATGAAGTGGTTGACCATTCTGTTATCA 8338643 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || ||||| ||||||| ||| ||||| || || || | || |||||||||||||| || Sbjct 8338642 AAGTCTTCTCCACCCAGGTGGGTATCACCTGCAGTGGACTTCACTTCAAAGATACCATCT 8338583 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAAT 7569 ||||| | | | || ||||| || || ||||||||||||||||| || Sbjct 8338582 TCAATTGTGAGGATAGACACATCGAAGGTGCCACCACCCAGGTCAAAGAT 8338533 Score = 89.7 bits (98), Expect = 7e-13 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 ||||||||||||| ||||||||||||| ||||||||||| || || ||||| | || Sbjct 8337004 CAAAAACTGTGTTGGTGGGGTTCATGGCAACCTGGTTCTTCGCAGCATCACCGATCA-AC 8336946 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCG 8075 | | | || || || || ||||| ||| || || | || || |||||||| | Sbjct 8336945 CT--CTCGGTGTCTGTGAAGGCAACGTAGCTTGGCGTGGTCCTGTTACCCTGGTCGTTGG 8336888 Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 | || ||||| || | | | ||| ||||||| ||||| || || || || || | || Sbjct 8336887 CGATGATTTCCACCTTGCCATGTTGGAAGACGCCAACGCAGGAGTAGGTGGTCCCGAGAT 8336828 Query 8136 CAATACCGATTGCTTGAGTCATTTTATATATTTTGT 8171 |||| || | ||| ||| |||| | ||||||| Sbjct 8336827 CAATCCCAACAGCT--GGTCCTTTT-GACATTTTGT 8336795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132244258800