Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq33 134 2e-26 seq1 95.1 1e-14 >seq33 Length=109106476 Score = 134 bits (148), Expect = 2e-26 Identities = 107/129 (83%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||||| || | ||||||||||| || | ||| |||||||| |||||||| || Sbjct 25982269 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 25982328 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | |||||| || | ||||||||| ||||||||||| || ||||| ||||||||||| ||| Sbjct 25982329 AACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 25982388 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 25982389 ACTACACGT 25982397 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | |||||||| || |||| |||| || || || |||||||| |||| Sbjct 25980936 CATGACTCCCATCCTCTGATATTCGCCTACTC-TCTTCTCAAAGAAGTTTGTCTTGCCTT 25980994 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| || || |||||||| ||||||||||| Sbjct 25980995 CAAGTGAAATGTTCTCCATAAAGTCAAATGGATT 25981028 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| |||| ||||| || || || | ||| |||||||| || ||||| ||||| || || Sbjct 25985348 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 25985407 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||||| || ||||||||||| | |||||| Sbjct 25985408 AATCTGGAAGCCATAAAAACAGCGAGCTTC 25985437 >seq1 Length=270692262 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 || ||||| || || | ||||| || || || | ||| ||||| | ||||| || || Sbjct 235935869 TCGTCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 235935928 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||||||||| || ||||||||||| || |||||||| ||||| ||||| ||||| || Sbjct 235935929 AGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACTGCAGCAAAGGCA 235935988 Query 37320 AC 37321 || Sbjct 235935989 AC 235935990 Score = 82.4 bits (90), Expect = 9e-11 Identities = 79/100 (79%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 37429 TTTCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATAT 37488 ||||| || |||| | || ||||| || ||||| | ||| ||||| || ||||||| || Sbjct 235941315 TTTCT-CAGGATCTTTGATGTAAGTGTCTATTAGCAGACTGTACATCTCTGAGTGAACAT 235941373 Query 37489 TTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||||||| |||||||||||||| ||||| | |||||| Sbjct 235941374 TTTCAATGAGAATCTGAAAACCATAGAAACAGCGAGCTTC 235941413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316281722800