Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 1e-12 seq24 84.2 2e-11 >seq1 Length=270692262 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 30160 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30219 || |||||||| ||||| ||||||||||| || || || ||||| | || || || | Sbjct 186510472 TATTCTGCTCCAAAATGTCTCCACTGGAAACCATAAACAGGTCCTAAATCCCCTTCCACT 186510531 Query 30220 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30279 ||||| ||| || || ||||| || || | || || ||||| ||||| ||||| Sbjct 186510532 CTGTGAGTGAAACCTTGTTTATCCAAGAACTCACGTGATCCATTGGCATCCCAAATCTTG 186510591 Query 30280 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 || ||||| | |||||||| || | ||||| || || Sbjct 186510592 ACTCCCTTTGCAGAGAGCTCGTTAGCATTTGTAGAGCC 186510629 >seq24 Length=75875076 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 112104 AAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGAT 112163 ||| || |||||||| |||| ||| || || ||| | | ||| | |||||| || || || Sbjct 52419790 AAGTTCTCTGCTGAGCACTATGTTAATTCTATCTTTTAAAGGACGATTCTTCTCAGGAAT 52419849 Query 112164 GGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 |||||||| ||||| |||||||||||| ||| || || || ||| Sbjct 52419850 AGAGAACCAGGTCTTCTTACCCATTATCAACACATTTTGTTTACCT 52419895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617251398110