Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq21 102 2e-16 seq1 91.5 3e-13 >seq21 Length=203625132 Score = 102 bits (112), Expect = 2e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 222032 ACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGC 222091 |||| | ||||||||| || || ||||| || || ||||| || || | |||||| Sbjct 200398399 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 200398458 Query 222092 TCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGC 222151 |||||| ||| |||| ||| ||| ||||| ||||||||| || || |||||||||| Sbjct 200398459 TCCTCCTTCCCGGTGTTCTTCTTCAAATCCAGAAACTCAAAGATATCCAAGTGCCACGGC 200398518 Query 222152 TCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||| || | ||| | ||| || |||| || Sbjct 200398519 TCCAGGTAAATGGCAAAAGCCCCAGGTCTCT 200398549 >seq1 Length=270692262 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||| ||||| || || || ||| || || ||||| ||||| || | Sbjct 235935992 TGGTTGCCTTTGCTGCAGTGGAAGGAATTTTCTTCTCAGGATCTTTTGCTGCCATATTTT 235935933 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 |||| ||| ||| || ||||| || ||| ||||| ||||| |||||||| ||||| Sbjct 235935932 GGCTGAAGAAGAGAGGCCTGATGCCTGGACTG-ACTTTCTCCAATGAGCTCATTAGCAGA 235935874 Query 26002 GACGAGG 26008 ||||||| Sbjct 235935873 GACGAGG 235935867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843987260800