Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq51 95.1 8e-14 seq67 86.0 4e-11 >seq51 Length=12259890 Score = 95.1 bits (104), Expect = 8e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| |||| || | ||||| ||||| || || ||||| || || || || || || Sbjct 8338218 GTTACTAATGCTGTGGTCACTGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCCACA 8338277 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| || | || |||||||| || || | || || || |||||||||||||| Sbjct 8338278 AAAGATGCTGGTACTATCGCAGGTCTCAACGTACTCCGAATCATCAATGAACCAACAGCT 8338337 Query 474848 GCCGCACTTGCTTATGG 474864 || || |||||||||| Sbjct 8338338 GCTGCTATTGCTTATGG 8338354 Score = 86.0 bits (94), Expect = 4e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||||| || ||| | || ||||| || ||| || || | ||| | || || Sbjct 8340026 TGAAGGGGAGAGAGCCATGACAAAAGACAACAACTTGCTGGGCAAGTTTGAACTGACGGG 8340085 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 || || || ||||| ||||| || ||||| |||||||| ||||||||||||||||| || Sbjct 8340086 CATCCCCCCAGCTCCTAGAGGCGTACCTCAGATTGAAGTCACTTTTGATATTGATGCCAA 8340145 Query 476152 TGGTATTCTTAATGT 476166 ||| || |||||||| Sbjct 8340146 TGGCATCCTTAATGT 8340160 >seq67 Length=916652 Score = 86.0 bits (94), Expect = 4e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 || ||||| || ||||| || ||||||||||| || ||| || | ||||| || ||| Sbjct 200182 CCGTCACGGCCAGCTCTTCCAATTTCTTGATAGTATGATTCCATTTCCTTAGGGGCTCCA 200123 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||| || ||| | | ||||| |||||| |||||||||||||| || | || ||| Sbjct 200122 TAATGAATAACTCTCCGGATATCTGCTTTATTGATACCCATTCCAAAAGCCACAGTAGCA 200063 Query 627889 AC 627890 || Sbjct 200062 AC 200061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268176197360360