Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq65 165 9e-36 seq26 113 5e-20 >seq65 Length=73173314 Score = 165 bits (182), Expect = 9e-36 Identities = 588/916 (64%), Gaps = 5/916 (1%) Strand=Plus/Minus Query 160037 CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTC 160096 ||| | | ||| || || || ||| || | ||| || | || || |||||| || Sbjct 67310736 CAGAGCTTTGTCTCTCAAATATTCTTCTAAACACTGAATTGCAAAAGGGTCAACATCCGT 67310677 Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 || ||||| || || || | ||||| ||| | | |||| | || ||||| Sbjct 67310676 ATCAAATTTGTTAGCAAAGAAGTGGTGT---TTCCGCAACATCCCATTCAAATCTCCCAC 67310620 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| ||||| || || ||||| | || | || | ||| || || || |||| || || Sbjct 67310619 CCCAAACACACACACAGAACGGACATGAATTCCATGGCATGGTGGATAGGGAGCACCATT 67310560 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 || || ||||| ||||||||||||||||||| ||||| | || | ||| || || Sbjct 67310559 AAATACATCCCCTTCAAAGTACTGCCACTTCACAAATCTGGCAAGGGCATTCATATCAGA 67310500 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 || || || | | | ||| ||||| ||||| | || || | || | ||| Sbjct 67310499 AACATCATACTTATTGCTGGAAGAAACTGCACCTGGAACTTCTGGGATTCTTTGAATGGT 67310440 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT 160396 ||||||| || ||| || ||||| || || || |||| |||||| || || | ||| Sbjct 67310439 AGCCCACAAGTATTCATCAGGGCTATATGTATCTTTAGCCCATTCAATAAATTTAAGGAT 67310380 Query 160397 TAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCC 160456 | |||| | || | || | || | || ||||| || || ||||| Sbjct 67310379 TTTGCTGTTTTCTAACACATATTCTACAAATCTCCTACTAACAACAAAATAGGCACTGCC 67310320 Query 160457 GGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCAC 160516 || || || ||| | | ||| || | ||||||| ||| |||| |||| Sbjct 67310319 AGAAAAAATTGGTGTACTAAGAGGTGGTAGTTTTTTGTCCACACCCATGTTTTTCACCTT 67310260 Query 160517 TCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTC 160576 ||| | || | | | | || ||||| | || |||| || ||||| || Sbjct 67310259 TCCATCAACAATTTCATAATGTTTTTTCCATCGTACTTCTTTGTTTGGAGGCATTTTCTC 67310200 Query 160577 CGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGT 160636 || |||| |||||| |||| | | | |||||| | || || || || || || Sbjct 67310199 AGTTTCTAAACTGTTTTCACCTTTTAAGGCTTTCAGTTTCTCTACAATTTCCTCATTGGT 67310140 Query 160637 CTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTC 160696 || | |||||||| |||| || | ||||||| || |||||||| | || Sbjct 67310139 TTTAATGGGAAAGTCCATACCACAAAGATTTATCAAATATTTCCATTTTGTATTCCTCCT 67310080 Query 160697 GTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTAC 160756 || ||||| ||||||| |||| ||||| || || | |||||| || || ||||| || Sbjct 67310079 GTAGAGGTCTTTCATGCAGTTAAGGTCTGCTTGTACCCTGCTCCACGATGCATACACCAC 67310020 Query 160757 GTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGC 160816 | || | || ||||| | |||||| ||||| ||||| || | |||||| ||| | Sbjct 67310019 ACTTTCCATTTGGCTGGCAATAAAGACATTATCAAAACATGATGCAATTCCCTTCACTG- 67309961 Query 160817 CAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCG 160875 ||| ||| | || | | |||| |||||| || | ||| || |||||||| | Sbjct 67309960 CAGCCAGATAAGATTCTGGAGACTTTTTGTCCACATGAATGCAGTAGTAATTCTGAGGAG 67309901 Query 160876 CGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGT 160935 ||||| | ||| || | || || ||||| || || || |||| | ||| || || | Sbjct 67309900 TATAGATTGACCTTAGAAGTCTTTCAAACATATCAATTTTGTGATAAACCACAATTGAAT 67309841 Query 160936 AGGCTATCGGAAACTC 160951 |||| || ||||| || Sbjct 67309840 AGGCAATAGGAAATTC 67309825 >seq26 Length=42306551 Score = 113 bits (124), Expect = 5e-20 Identities = 221/326 (68%), Gaps = 3/326 (1%) Strand=Plus/Plus Query 160046 GTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTT 160105 ||| ||||| || || ||||| || ||||| || | | || || |||||| || Sbjct 11106839 GTGGCGCAGGTGCTCCTCCAGGCACTGGACCGCCTGCTCATCCACACTCAGGTCGAACTT 11106898 Query 160106 ATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACAC 160165 || || | ||| || || | ||| || |||||| ||| ||| || ||| | | Sbjct 11106899 GTTGGCCAGCAGGTGTTGC---TGCTGGAGCATCCAGGGCAGGTCCCCCAGGCCGTAGAT 11106955 Query 160166 GCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTC 160225 ||||| || | | |||| |||| |||| |||||||| | || || | | ||| Sbjct 11106956 GCAGATGGCATGGCGGTGCGTGCCGGTGCAGGGCGGGTAGGGTGCCCCCCGCATTATGTC 11107015 Query 160226 ACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTA 160285 || || |||||||||||| || || | || | || | ||||||||| | ||| Sbjct 11107016 GCCCTCCAGGTACTGCCACTTGACTAAGCGTGCCAGGGCGTTCATGTCGGACAGCTGGTA 11107075 Query 160286 TTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAG 160345 |||| | | || | || || || ||||| |||| |||||||| |||||||||| Sbjct 11107076 CTTGTTGTTGGGCGGCAAGGAGCCTGGCACGCCCGGCAGGCGCTGTAGCGTGGCCCACAC 11107135 Query 160346 GTGTTCGTCGGGGCTGTACGTGTCCT 160371 || ||||| |||||||||||||||| Sbjct 11107136 ATGCTCGTCCGGGCTGTACGTGTCCT 11107161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577218694933200