Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq51 246 4e-60 seq62 217 2e-51 seq36 168 9e-37 seq47 163 4e-35 seq40 91.5 2e-13 >seq51 Length=12259890 Score = 246 bits (272), Expect = 4e-60 Identities = 383/542 (71%), Gaps = 4/542 (1%) Strand=Plus/Plus Query 195865 AAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGA 195924 |||||| ||||||||||| || |||||||| || || ||||| || | |||| ||||| Sbjct 8338523 AAATGTTTTGATCTTTGACCTGGGTGGTGGCACCTTCGATGTGTCTATCCTCACAATTGA 8338582 Query 195925 AGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTT 195984 || |||||| || ||||| ||| | ||||| |||||||| || || ||||| ||||| || Sbjct 8338583 AGATGGTATCTTTGAAGTGAAGTCCACTGCAGGTGATACCCACCTGGGTGGAGAAGACTT 8338642 Query 195985 CGATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATAT 196044 ||| | | || || || || ||||||| || ||| | |||||||| || Sbjct 8338643 TGATAACAGAATGGTCAACCACTTCATTGCTGAGTTCAAGCGCAAGCACAAGAAAGACAT 8338702 Query 196045 TTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAAC 196104 || ||| || || |||| || || | || |||||||||||||| || || || Sbjct 8338703 CAGTGAAAACAAGAGAGCAGTTCGCCGTCTCCGCACAGCATGTGAACGTGCAAAGCGTAC 8338762 Query 196105 TCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTT 196164 ||||| |||| | || | | ||||||||||||| | | ||| || |||||||| Sbjct 8338763 CCTCTCCTCTAGCACGCAGGCCAGTATTGAGATTGATTCTCTCTATGAGGGCATTGACTT 8338822 Query 196165 CTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTG 196224 ||| || | || ||||| || || ||||||||||| ||| ||||| |||| | Sbjct 8338823 CTACACCTCAATCACCCGAGCTCGCTTTGAAGAGTTGAACGCTGATCTGTTCCGTGGTAC 8338882 Query 196225 TATGGAACCTGTTGAACAAGTACTT-CGTGACGCAAAGATGGATAAGTCTAAGGTTGATG 196283 | |||| |||| || | ||| ||| || || || ||| | || || || || | ||| Sbjct 8338883 TCTGGACCCTG-TGGAGAAGGCCTTGCGGGATGCCAAGCTCGACAAATCCCAGATCCATG 8338941 Query 196284 AAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG-C 196342 | ||||| | || || || || || || || || ||||||| | | | | | | || | Sbjct 8338942 ACATTGTATTGGTTGGTGGGTCCACTCGCATCCCAAAGATTC-AGAAACTCCTACAAGAC 8339000 Query 196343 TTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGT 196402 ||||||||| ||||| | ||||| | ||||| || |||||||| || ||||||||| Sbjct 8339001 TTCTTCAATGGCAAAGAGCTGAACAAGAGCATCAATCCTGATGAAGCTGTAGCTTATGGT 8339060 Query 196403 GC 196404 || Sbjct 8339061 GC 8339062 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 |||| || || |||||||| || ||||||| ||| || || || ||||| ||||| || | Sbjct 8338225 ATGCTGTGGTCACTGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCCACAAAAGATG 8338284 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827 ||| | |||| || ||||| ||| || |||| ||||||||||||||||| ||||| | Sbjct 8338285 CTGGTACTATCGCAGGTCTCAACGTACTCCGAATCATCAATGAACCAACAGCTGCTGCTA 8338344 Query 195828 TTGCTTATGGTCTGGACAAGAA 195849 |||||||||| | ||||| || Sbjct 8338345 TTGCTTATGGCTTAGACAAAAA 8338366 >seq62 Length=117929553 Score = 217 bits (240), Expect = 2e-51 Identities = 1011/1592 (64%), Gaps = 27/1592 (2%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| ||||| || || ||||| || || || || | || ||| Sbjct 104771268 GCGATCGGCATCGACTTAGGCACCACCTACTCCTGCGTGGGCGTCTTCCAGCATGGCAAG 104771209 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | |||||||| || ||||| || || || ||||| ||||| || Sbjct 104771208 GTGGAGATCATCGCCAATGACCAGGGGAACCGCACCACGCCCAGCTACGTGGCCTTCACG 104771149 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | || || ||| | || || || || || || ||| || |||||||| | || Sbjct 104771148 GACACGGAGCGCCTCATCGGCGACGCGGCCAAGAACCAGGTGGCCATGAACCCCACTAAC 104771089 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || |||| ||||| ||||| || || || ||||||| || | || || | Sbjct 104771088 ACCATCTTCGACGCCAAGCGCCTCATCGGCCGCAAGTACGACGACCCCACGGTGCAGGCG 104771029 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCG-GTGTGGCTGATAAGCCTATGATTAA 195597 || || ||| ||||| | | || || || | | ||| ||||| | | | | Sbjct 104771028 GACATGAAGCACTGGCCCTTCCGCGTAGTGAGCGAGGGCGGC----AAGCCCAAGGTGCA 104770973 Query 195598 TGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGT 195656 || || | | | || || | || | || |||| ||||| || || |||||| Sbjct 104770972 AGTGGAGTATAAAGGCGA-ATCCAAGACCTTCTTCCCTGAAGAGATCAGCTCCATGGTGC 104770914 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 ||| ||||||||||||| || || ||| |||| | ||| | | || || Sbjct 104770913 TGACCAAGATGAAGGAGATCGCTGAGGCTTATCTGGGCCGCAAGGTGCAGAACGCCGTCA 104770854 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | || || || || ||||||| || || || || ||||| || || || || | | | Sbjct 104770853 TCACCGTGCCCGCCTACTTCAACGACTCGCAGCGCCAGGCTACCAAAGATGCAGGCACCA 104770794 Query 195777 TTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATG 195836 | |||| || ||| | | || ||||| || || || ||||| || || || || | Sbjct 104770793 TCACGGGCCTCAACGTGATGCGCATCATCAACGAGCCCACGGCGGCCGCCATCGCCTACG 104770734 Query 195837 GTCTGGACAAGAA---CAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890 | ||||||||||| | | | || || || || || ||||||| || || || | Sbjct 104770733 GGCTGGACAAGAAGGGCGCGCGCGCCGGCGAGAAGAACGTGCTGATCTTCGACCTGGGCG 104770674 Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTA 195950 | || || || || || || | |||| || || | || || ||||| || ||| | | Sbjct 104770673 GCGGCACCTTCGACGTGTCCATCCTCACCATCGAGGACGGCATCTTCGAGGTGAAGTCGA 104770614 Query 195951 CTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGT 196010 | || || || || || || || || || || ||||| || | | || || Sbjct 104770613 CGGCGGGCGACACGCACCTGGGCGGCGAGGACTTCGACAACCGCATGGTGACGCACTTCG 104770554 Query 196011 CTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTC 196070 || |||||| || ||| | ||| || || || || |||| | || | Sbjct 104770553 TGGAGGAGTTCAAGCGCAAGCACAAGCGCGACATCGGCGGCAACAAGCGGGCGGTGCGGC 104770494 Query 196071 GGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCT---CTCTTCTACGGCTCAAACAA 196127 |||| | || || || || || ||||| || || || ||| || ||| || | | Sbjct 104770493 GGCTGCGCACGGCGTGCGAGCGGGCCAAGCGCACGCTGAGCTCCTCCACG---CAGGCCA 104770437 Query 196128 TGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCAC 196187 | ||||| || ||| |||| || || || |||||||| || | || || || || | Sbjct 104770436 GCATCGAGATCGACTCGCTGTTCGAGGGCATCGACTTCTACACGTCCATCACGCGGGCGC 104770377 Query 196188 GTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTAC 196247 | || || ||| | ||| | || |||| | |||| || || || | | | Sbjct 104770376 GCTTCGAGGAGCTGAACGCCGACCTGTTCCGCGGCACGCTGGAGCCGGTGGAGAAGGCGC 104770317 Query 196248 TTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAA 196307 | || ||||| ||| |||| ||| |||| | || || || || ||||| || || | Sbjct 104770316 TGCGCGACGCCAAGCTGGACAAGGGGCAGGTGCAGGAGATCGTGCTGGTGGGCGGCTCGA 104770257 Query 196308 CCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACA 196367 | || || || ||||| || || |||| ||||||||| || || | |||| Sbjct 104770256 CGCGCATCCCCAAGATCCAGAAGCTGCTGCAGGACTTCTTCAACGGCAAGGAGCTGAACA 104770197 Query 196368 AAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCT 196427 | | |||||||| || || || || || || || ||||| || || || || || || Sbjct 104770196 AGAGCATCAACCCCGACGAGGCGGTGGCGTACGGCGCGGCGGTGCAAGCCGCCAT--CCT 104770139 Query 196428 CAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTAT 196484 || | | ||||| | ||||| || || || ||||| || || || | || | | Sbjct 104770138 CATG-GGCGACAAGTCGGAGAACGTGCAGGACCTGCTGCTGCTGGACGTGACGCCGCTGT 104770080 Query 196485 CCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTA 196544 | || || | || || ||||| || || ||||| | || | | ||||| || | Sbjct 104770079 CGCTCGGCATCGAGACGGCGGGCGGCGTCATGACGGCGCTCATCAAGCGCAACACCACCA 104770020 Query 196545 TTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTCAT 196603 | || || ||| || || ||| | || || || || || || | || | || | Sbjct 104770019 TCCCCACCAAGCAGACGCAGACCTTCACCACCTACTCGGACAACCAGAGCA-GCGTGCTG 104769961 Query 196604 ATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTC 196663 | || || || || || || ||| || | ||||| ||| | || || || | ||| Sbjct 104769960 GTGCAGGTGTACGAGGGCGAGCGCGCCATGACCAAGGACAACAACCTGCTGGGCAAGTTC 104769901 Query 196664 GATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGAT 196723 || |||| || || || | || || | || || || ||||| | || |||||| Sbjct 104769900 GACCTGACCGGCATCCCGCCGGCGCCGCGCGGCGTGCCGCAGATCGAGGTCACCTTCGAC 104769841 Query 196724 ATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAA 196783 || ||||| || || || || ||||| | || | |||||| | ||||| | Sbjct 104769840 ATCGACGCCAACGGCATCCTCAACGTGAGCGCGGCCGACAAGAGCACGGGCAAGGAGAAC 104769781 Query 196784 AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTT 196843 ||||| || ||||| |||||||| ||||| ||||| || || || || ||||| Sbjct 104769780 AAGATCACCATCACCAACGACAAGGGCCGGCTCAGCAAGGACGACATCGACCGCATGGTG 104769721 Query 196844 CAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 || || || || ||||||| || || ||||| Sbjct 104769720 CAGGAGGCCGAGAAGTACAAGGCGGAGGACGA 104769689 >seq36 Length=28007247 Score = 168 bits (186), Expect = 9e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || || || |||||||||||||| ||| | Sbjct 6676618 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 6676559 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | || |||||||| || || || ||||||||||| || || ||| Sbjct 6676558 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 6676499 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| |||||||| || ||||| | || |||||| Sbjct 6676498 CAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 6676439 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| || || ||||| || || | || |||||||| Sbjct 6676438 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGT 6676391 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || ||||| || || || || |||||||||||||| ||| | Sbjct 6677523 ATGCAGATCTTTGTAAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 6677464 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | ||||||||||| || || || || |||||||| || || ||| Sbjct 6677463 GACACCATTGAGAATGTAAAAGCCAAGATCCAGGACAAAGAGGGCATTCCCCCTGACCAG 6677404 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| |||||||| || ||||| | || |||||| Sbjct 6677403 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 6677344 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| || || || || || || | || ||||||| Sbjct 6677343 ATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTGAGGGGTGG 6677297 >seq47 Length=18085138 Score = 163 bits (180), Expect = 4e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| ||||||||||| ||||| ||||| || || |||||||| ||||| ||| | Sbjct 16075470 TATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 16075411 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 ||||| || || || | || || ||||| || || || ||||||||||| || || || Sbjct 16075410 TGACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCA 16075351 Query 171981 GCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAA 172040 ||| | || || |||||||| || ||||| |||||||| || ||||| |||| ||||| Sbjct 16075350 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 16075291 Query 172041 CGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | | || ||||| || || || ||||| || || | || ||||||| Sbjct 16075290 CATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTCAGGGGTGG 16075243 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| ||||||||||| ||||| ||||| || || |||||||| ||||| ||| | Sbjct 16076007 TATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 16075948 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 ||||| || || || | || || ||||| || || || |||||||| || || || || Sbjct 16075947 TGACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCA 16075888 Query 171981 GCAACGACTTATTTTTGC 171998 ||| | || |||||||| Sbjct 16075887 GCAGAGGCTGATTTTTGC 16075870 >seq40 Length=20244435 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 196618 AGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGA 196676 ||| ||||| ||| || |||||||||| ||||| || || ||||| || |||| || | Sbjct 18790004 AGGTGAACG-TCCTCTGACAAAGGATAATCATCTCCTGGGCACTTTTGACCTGACTGGAA 18789946 Query 196677 TTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATG 196736 | || |||| || | ||||| || |||||| | ||| ||| || ||||| | |||| Sbjct 18789945 TCCCTCCTGCCCCTCGTGGTGTCCCGCAGATTGAAGTTACCTTTGAGATAGATGTGAATG 18789886 Query 196737 GAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTA 196796 |||| || || |||||||| ||||| | | |||| || | ||||| |||| Sbjct 18789885 GAATCCTCCGTGTTACAGCTGAAGACAAAGGTACTGGGAACAAAAACAAGATCACAATTA 18789826 Query 196797 CCAATGA 196803 ||||||| Sbjct 18789825 CCAATGA 18789819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861824370400