Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq46 170 2e-36 seq1 141 1e-27 seq33 102 1e-15 seq54 87.8 2e-11 >seq46 Length=143779068 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| || | || Sbjct 59948877 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGA 59948818 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| ||||||| | ||||||| |||| | Sbjct 59948817 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCGCCGGCGATGCGCTCGAAGA 59948758 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| ||| |||| Sbjct 59948757 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGT 59948698 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 59948697 GCACCTGCTTCAGCACCTTGTA 59948676 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 59632498 GCTTGGCCAGCTCCCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 59632557 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 59632558 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGA 59632617 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| |||||||| ||| |||| Sbjct 59632618 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGT 59632677 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 59632678 GCACCTGCTTCAGCACCTTGTA 59632699 Score = 104 bits (114), Expect = 3e-16 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || ||||| || ||||| || || || | || Sbjct 117776703 GCTTGGCCAGCTCCCCTGGCAGCAGTAGACGCACAGCTGTCTGAATTTCCCGGGAAGTGA 117776644 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | ||||||||||| |||||| | ||||| || | | Sbjct 117776643 TGGTTGAGCGCTTGTTGTAATGCGCCAGACGAGAGGCCTCCCCAGCAATGCGCTCAAAAA 117776584 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| |||||||| |||||||||| ||| | |||| ||||| || |||||| | Sbjct 117776583 TGTCATTGACAAAGGAGTTCATGATGCCCATGGCCTTGGAAGAGATTCCGGTGTCGGGAT 117776524 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 117776523 GAACCTGCTTCAGCACCTTGTA 117776502 Score = 87.8 bits (96), Expect = 2e-11 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| || | || Sbjct 59648425 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGA 59648484 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCG 1254443 | ||| ||||||||| |||||||||| ||| ||||||| Sbjct 59648485 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCG 59648525 >seq1 Length=270692262 Score = 141 bits (156), Expect = 1e-27 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||| | |||||| || || Sbjct 80062 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGCACCTCGCGGCTGGTGA 80003 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||||| | |||||||| || | |||||| || ||||||| |||| || Sbjct 80002 TGGTGGTGCGCTTGTTGTACTGCGCCAGGCGCGCCGCCTCGCTGGCGATGCGCTCGAACA 79943 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || || |||||||||| ||| | ||| |||||| || ||| |||| Sbjct 79942 CGTCGTTCACGAAGGAGTTCATGATGCTCATGGCCTTCGAGGAGATCCCGGTGTCTGGGT 79883 Query 1254523 GCACCTGC 1254530 |||||||| Sbjct 79882 GCACCTGC 79875 >seq33 Length=109106476 Score = 102 bits (112), Expect = 1e-15 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 |||||||||||||||||||| |||||||| ||||| |||||||||| ||| || | || Sbjct 25987796 CACCTCCTCGGCGGTCCAGAAGGAGGCCTCAGCCTTCTTGTACATCTGCCACACGTCGTG 25987855 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 ||| | | ||||||| ||| |||||| |||||||| |||| ||| || || Sbjct 25987856 GTACTGCACGGGGAAGATGACGAAGCGGCGCGGGTTGTCCCGCAGCAGCGGCTC 25987909 >seq54 Length=8819460 Score = 87.8 bits (96), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 1852372 CTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAG 1852431 |||| | |||||||| || || ||| ||| | || |||||||| ||| || || Sbjct 8686467 CTGGAAGTCGGTGCCTCGGACGAACGTGAGCTTCTCGAGGGGCACGCCAATGCTCTCCAG 8686526 Query 1852432 CATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGT 1852491 |||||||||||| | |||||| ||||| || | || | ||| |||||||||| Sbjct 8686527 CATGGCCTTGATCACGGTCTCGTAGTAGCGGGTGCGCAGCTCCAGCAGCTCCCACGGCGC 8686586 Query 1852492 CTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGC 1852551 ||| |||||| || | |||||| | ||| ||||| || || | ||| | | || || Sbjct 8686587 CTTCATGTTGTCCAGATAGGCGTGGAGGTCAGCAAACAGTATGGTCACCTGGC-GCAGGG 8686645 Query 1852552 CTGGAGAAAGTCGGC 1852566 | ||||| || |||| Sbjct 8686646 CGGGAGAGAGCCGGC 8686660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107133455472190