Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq46 224 2e-52 seq1 206 4e-47 seq33 95.1 2e-13 >seq46 Length=143779068 Score = 224 bits (248), Expect = 2e-52 Identities = 196/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 59948916 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 59948857 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||||||||||||||| |||| ||| ||| ||||||||| | Sbjct 59948856 GCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGATGGTGGAGCGCTTGTTGTAGT 59948797 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 59948796 GCGCCAGGCGGGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 59948737 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||| |||||||||||||| |||||||||| Sbjct 59948736 TGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 59948677 Query 1485710 AAAC 1485713 | || Sbjct 59948676 ACAC 59948673 Score = 197 bits (218), Expect = 2e-44 Identities = 190/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 59632459 TGTACTTGGTGACAGCCTTGGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 59632518 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 59632519 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 59632578 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 59632579 GCGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 59632638 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||| |||||||||||||| |||||||||| Sbjct 59632639 TGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 59632698 Query 1485710 AAAC 1485713 | || Sbjct 59632699 ACAC 59632702 Score = 131 bits (144), Expect = 3e-24 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || ||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 59648386 TGTATTTAGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 59648445 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||||||||||||||| |||| ||| ||| ||||||||| | Sbjct 59648446 GCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGATGGTGGAGCGCTTGTTGTAGT 59648505 Query 1485590 GCGCCAGGCGGCCGGCCTCG 1485609 ||||||||||| ||||||| Sbjct 59648506 GCGCCAGGCGGGAGGCCTCG 59648525 Score = 131 bits (144), Expect = 3e-24 Identities = 107/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 59931975 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 59932034 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||||||||||||||| |||| ||| ||| ||||||||| | Sbjct 59932035 GCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGATGGTGGAGCGCTTGTTGTAGT 59932094 Query 1485590 GCGCCAGGCG 1485599 |||||||||| Sbjct 59932095 GCGCCAGGCG 59932104 Score = 125 bits (138), Expect = 1e-22 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||| ||||| |||||||| || || || || || ||| ||||||| || || ||| Sbjct 117776740 TACTTAGTGACAGCCTTGGTGCCTTCAGATACAGCATGCTTGGCCAGCTCCCCTGGCAGC 117776681 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || ||||| || ||||| || || |||| ||| || ||||||||| || Sbjct 117776680 AGTAGACGCACAGCTGTCTGAATTTCCCGGGAAGTGATGGTTGAGCGCTTGTTGTAATGC 117776621 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||| || |||||| | ||||| || | ||||| |||||||| ||||||||| Sbjct 117776620 GCCAGACGAGAGGCCTCCCCAGCAATGCGCTCAAAAATGTCATTGACAAAGGAGTTCATG 117776561 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| ||||| || |||||| || |||||||| ||||||||||| Sbjct 117776560 ATGCCCATGGCCTTGGAAGAGATTCCGGTGTCGGGATGAACCTGCTTCAGCACCTTGTAC 117776501 Query 1485712 AC 1485713 || Sbjct 117776500 AC 117776499 >seq1 Length=270692262 Score = 206 bits (228), Expect = 4e-47 Identities = 184/228 (81%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 80101 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 80042 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||| | ||||||| || ||| ||| |||||||||| || | Sbjct 80041 GCAGCAGGCGCACGGCCGTCTGCACCTCGCGGCTGGTGATGGTGGTGCGCTTGTT-GTAC 79983 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 |||||||||| | |||||| || ||||||| |||| || |||||| || || |||||| Sbjct 79982 TGCGCCAGGCGCGCCGCCTCGCTGGCGATGCGCTCGAACACGTCGTTCACGAAGGAGTTC 79923 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||| ||| | || |||||| || ||| |||||||||||| Sbjct 79922 ATGATGCTCATGGCCTTCGAGGAGATCCCGGTGTCTGGGTGCACCTGC 79875 >seq33 Length=109106476 Score = 95.1 bits (104), Expect = 2e-13 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGT--T 796360 ||||||||||||||||| ||||||||||| ||||| |||||||||| ||| | ||| | Sbjct 25987797 ACCTCCTCGGCGGTCCAGAAGGAGGCCTCAGCCTTCTTGTACATCTGCCACA--CGTCGT 25987854 Query 796361 GGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||| | | |||||| | || ||||| ||||| || || ||||||||||| Sbjct 25987855 GGTACTGCACGGGGAAGATGACGAAGCGGCGCGGGTTGTCCCGCAGCAGCGGCTC 25987909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916238953780730