Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq51 107 1e-17 seq67 86.0 5e-11 >seq51 Length=12259890 Score = 107 bits (118), Expect = 1e-17 Identities = 355/544 (65%), Gaps = 10/544 (2%) Strand=Plus/Minus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| || ||||||||||||||||| | | | || || | ||| |||||||| Sbjct 8339062 GCACCATAAGCTACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 8339003 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 || | | || |||| ||| | ||| || || |||| || || ||||| |||||||| Sbjct 8339002 AAGTCTTGTAGGAGTT-TCTGAATCTTTGGGATGCGAGTGGACCCACCAACCAATACAAT 8338944 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||| ||||| || || || | |||| || | || || || || || || Sbjct 8338943 GTCATGGATCTGGGATTTGTCGAGCTTGGCATCCCGCAAGGCCTTCTCCACAGGGTCCAG 8338884 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT- 282014 | | | | |||| || | | ||||| || ||||| || || ||| | Sbjct 8338883 AGTACCACGGAACAGATCAGCGTTCAACTCTTCAAAGCGAGCTCGGGT--GATTGAGGTG 8338826 Query 282015 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073 || || ||||| || || | | |||||||| ||||| | | || || ||| || Sbjct 8338825 TAGAAGTCAATGCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGCGTGCTAGAGGAG 8338766 Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG--CTTTTGCTGATT 282131 || | ||| || ||||||||||||||||| | || | || | | || ||| | || Sbjct 8338765 AGGGTACGCTTTGCACGTTCACATGCTGTGCGGAGACGGCGAACTGCTCTCTTGTT--TT 8338708 Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGAT 282191 | | | ||| | || | || | |||||| || ||| | | || | | | Sbjct 8338707 CACTGATGTCTTTCTTGTGCTTGCGCTTGAACTCAGCAATGAAGTGGTTGACCATTCTGT 8338648 Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 ||||||| ||||| || |||| | |||| |||| || | | |||| || | | Sbjct 8338647 TATCAAAGTCTTCTCCACCCAGGTGGGTATCACCTGCAGTGGACTTCACTTCAAAGATAC 8338588 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 ||||||||| | | | || ||||| ||| |||||||||| ||||| || | | Sbjct 8338587 CATCTTCAATTGTGAGGATAGACACATCGAAGGTGCCACCACCCAGGTCAAAGATCAAAA 8338528 Query 282312 CATT 282315 |||| Sbjct 8338527 CATT 8338524 Score = 86.0 bits (94), Expect = 5e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||| ||||||||||| || |||| | || Sbjct 8338366 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCTGTTGGTTCATTGATGATTCGGAGTACG 8338307 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||| || || | || |||||||| ||||| || | || || || || || || Sbjct 8338306 TTGAGACCTGCGATAGTACCAGCATCTTTTGTGGCCTGGCGCTGGGAGTCATTGAAGTAG 8338247 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || ||||| | || |||| Sbjct 8338246 GCTGGTACAGTGACCACAGCAT 8338225 >seq67 Length=916652 Score = 86.0 bits (94), Expect = 5e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || || | || ||||| |||||||| |||||| | ||| | | ||||| Sbjct 200057 TGTTGTTGCTACTGTGGCTTTTGGAATGGGTATCAATAAAGCAGATATCCGGAGAGTTAT 200116 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| ||||| || ||| | || ||| || |||||||||||||| ||||| || || Sbjct 200117 TCATTATGGAGCCCCTAAGGAAATGGAATCATACTATCAAGAAATTGGAAGAGCTGGCCG 200176 Query 131296 TGATGGA 131302 ||| ||| Sbjct 200177 TGACGGA 200183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740626963295820