Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq33 170 2e-37 >seq33 Length=109106476 Score = 170 bits (188), Expect = 2e-37 Identities = 416/620 (67%), Gaps = 13/620 (2%) Strand=Plus/Minus Query 176975 CACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAG 177034 |||||| |||||||||| | | || | ||||| || || || |||| || | || || Sbjct 75771812 CACGTGTATGAAAGCGTTTGCTGGAATATAATTCTCATAGTTTTCTCGGGACGGACCCAG 75771753 Query 177035 TACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATATAGTCCCT 177094 ||| | ||||| | || || | || || ||| |||||||| ||||| || || | Sbjct 75771752 TACGACTGGTACAGACCCAGCAAGAAAAGCATTGTACAGTTTTTCCGTAATGTAATCTTT 75771693 Query 177095 GTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGA--AGATAGTAGCGGGATGAAG 177152 ||| | ||||| ||||| | || || |||||||| | ||||||| | | || ||| Sbjct 75771692 GTGGATTGAGTTTTCAAAGGAAAGGTAAAATTTACAAGTGGAGATAGTTG--GAATCAAG 75771635 Query 177153 TCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTATGTGTTTA 177212 | | ||| | ||| ||||| | | | | ||| || ||| || || |||| ||| Sbjct 75771634 TTTTTATCATTCACATAGTCTCCAAATGCTTGCCCATAGGTATGGATTTCAATGTATTTG 75771575 Query 177213 CTGAGCTCTAGGTAGTATCTCGA-TCTCACGTGGTCGTTGTTCCAATTGCTGACGACCCA 177271 || ||||| || || || || || | || || |||||| || || || ||||| Sbjct 75771574 CTAAGCTCATTATAATA-CTTGACTCGAGCATGCTCAGGGTTCCAGTTACTTACAACCCA 75771516 Query 177272 GCAAACTAACTTGCTCTTTGCGGGAACGGGATTCGATACTAA-TGCAGTGTCTCTGAGCG 177330 || || | ||| |||||||| | || ||| | ||| || ||| || | | Sbjct 75771515 ACAGACCAGCTT-CTCTTTGCTTG---GGACTTCAAATGTAAATGGAGTTGTACTAACCA 75771460 Query 177331 TTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGTGAGATTGA 177390 | | | ||||| ||||| |||||||| || || |||| ||| || | || | |||| Sbjct 75771459 TCATGAAGCCATAAGGCACCTGAATATCTGAATCACGTCGGTAAGTCAGGGTCAAGTTGA 75771400 Query 177391 AAAGGTTTTCTATACCT-TGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTTCATCCAT 177449 |||||| ||| || || | ||| || | ||| | | || || |||||||||||||| Sbjct 75771399 AAAGGTGTTCAATGCCGCTCTTTTGTGGAG-TGTGAGTTGGAGACTCTAAGTTCATCCAG 75771341 Query 177450 ATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTATACTTATC 177509 ||||| || || || | |||||| | || | ||||| | || |||| || || Sbjct 75771340 ATCCATTTCTGGAATGGTGGTCTAGTTTGCTGAGGTAAATTAGTCAGATCCCAGCTGATG 75771281 Query 177510 TCTCTGTGGTGAAAGACTACGGCATTGGCTTTGTAATAAACAGATCTGTCTACGGTAACG 177569 ||||||||||||| || ||||||| || | ||| ||| | || | ||| | || | Sbjct 75771280 TCTCTGTGGTGAATGAGAACGGCATGGGATCTGTTATATAATGAGCGGTCAATAGTCAGA 75771221 Query 177570 TGACACGCACGTATGTTAAA 177589 || ||| || | ||||| || Sbjct 75771220 TGGCACCCATGGATGTTGAA 75771201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578431493872000