Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq46 188 1e-41 seq1 168 1e-35 seq33 98.7 1e-14 >seq46 Length=143779068 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| || |||| ||||| Sbjct 59948676 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCGTCCAAGGCCATG 59948729 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 59948730 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCCCGC 59948789 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | || ||||||||||||||||||||| Sbjct 59948790 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACCGCCGTGCGC 59948849 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 59948850 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 59948898 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| || |||| ||||| Sbjct 59632699 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCGTCCAAGGCCATG 59632646 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | |||||| ||| Sbjct 59632645 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCCCGC 59632586 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 59632585 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 59632526 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 59632525 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCA 59632477 Score = 122 bits (134), Expect = 1e-21 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 725021 CGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCA 725080 ||||||| |||||||||| || |||||||||| ||| ||| | || |||||||| Sbjct 59648525 CGAGGCCTCCCGCCTGGCGCACTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCA 59648466 Query 725081 GACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||||||||||||||| | ||| ||| || ||||||| ||||||||| ||||||||||| Sbjct 59648465 GACCGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCAC 59648406 Query 725141 CA 725142 || Sbjct 59648405 CA 59648404 Score = 116 bits (128), Expect = 5e-20 Identities = 93/112 (83%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || |||||||||| ||| ||| | || |||||||||||||||||| Sbjct 59932104 CGCCTGGCGCACTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACCGCCGTG 59932045 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 59932044 CGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 59931993 Score = 104 bits (114), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| || ||| |||| ||| || |||| ||||| Sbjct 117776502 TACAAGGTGCTGAAGCAGGTTCATCCCGACACCGGA-----ATC-TCTTCCAAGGCCATG 117776555 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| |||||||| ||||| | || ||||| | |||||| ||| Sbjct 117776556 GGCATCATGAACTCCTTTGTCAATGACATTTTTGAGCGCATTGCTGGGGAGGCCTCTCGT 117776615 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || || || ||||| || ||||| Sbjct 117776616 CTGGCGCATTACAACAAGCGCTCAACCATCACTTCCCGGGAAATTCAGACAGCTGTGCGT 117776675 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || || ||||||| ||| || || || || ||||||| Sbjct 117776676 CTACTGCTGCCAGGGGAGCTGGCCAAGCATGCTGTATCTGAAGGCACCA 117776724 >seq1 Length=270692262 Score = 168 bits (186), Expect = 1e-35 Identities = 144/178 (81%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||| ||||||||||| || || |||||| || |||| ||||||| || |||| Sbjct 79906 AAGGCCATGAGCATCATGAACTCCTTCGTGAACGACGTGTTCGAGCGCATCGCCAGCGAG 79965 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || | |||||||||| | ||||||||||| ||| ||| || |||||| | ||||| Sbjct 79966 GCGGCGCGCCTGGCGCAGTACAACAAGCGCACCACCATCACCAGCCGCGAGGTGCAGACG 80025 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||||||||| | ||| |||||| ||||||| |||||||||||| |||||||||| Sbjct 80026 GCCGTGCGCCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCTGAGGGCACCA 80083 >seq33 Length=109106476 Score = 98.7 bits (108), Expect = 1e-14 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||||| || |||||| |||||| ||| | |||||| | | ||||| Sbjct 25987909 GAGCCGCTGCTGCGGGACAACCCGCGCCGCTTCGTCATCTTCCCCGTGCAGTACCACGAC 25987850 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 | ||| | |||||| || ||||| ||||||||||| ||||||||||||||||| Sbjct 25987849 GTGTGGCAGATGTAC-AAGAAGGCTGAGGCCTCCTTCTGGACCGCCGAGGAGGT 25987797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177804448371340