Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 129 8e-25 seq33 125 1e-23 seq21 84.2 3e-11 >seq1 Length=270692262 Score = 129 bits (142), Expect = 8e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 39631 ATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACC 39690 ||||| |||| ||||| ||||| | || || || || || ||||||||||| || || Sbjct 235935859 ATGTATTACCTCGTCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCC 235935918 Query 39691 ACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGC 39750 | ||| || |||||||||||||||||||||||||| || ||||| || ||||| ||||| Sbjct 235935919 TCTCTTCTTCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACTGC 235935978 Query 39751 TGCAAATGCAACAAGTCTCTCTCC 39774 ||||| ||||| | |||||| || Sbjct 235935979 AGCAAAGGCAACCACTCTCTCCCC 235936002 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 ||| ||||||||| || |||||||| || || ||||||||||||| | |||| |||| Sbjct 235942651 CCAGATTTTCATTTACAATTCCATCGCTGGCTGCAAAAAATGCCAGGATATGTGATATAA 235942710 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGT 40091 |||||||||| || | | |||| || ||||||| Sbjct 235942711 AATATTTTTCTTCCGATTTCAACTTGTTCCAGT 235942743 >seq33 Length=109106476 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | || |||||||| |||||||||||||||| || | || | Sbjct 25982267 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 25982326 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | |||||| |||| |||||||| |||||||||||||| ||||| ||||||||||| | Sbjct 25982327 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 25982386 Query 39759 CAAC 39762 | || Sbjct 25982387 CTAC 25982390 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||| | || || ||||| | |||||| |||||||||||||| |||||||| || || Sbjct 25985348 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 25985407 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || || |||||||| | ||||| || || || || ||| Sbjct 25985408 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTCT 25985453 >seq21 Length=203625132 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 ||||| || || || | |||| || ||||| || ||||||||||| || || | ||| Sbjct 200389017 TGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGATGGAT 200389076 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822 |||||||| |||| ||| ||||| || || ||||||||||| || Sbjct 200389077 TCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGG 200389120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908198954800