Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq33 114 1e-20 seq1 114 1e-20 seq29 82.4 6e-11 >seq33 Length=109106476 Score = 114 bits (126), Expect = 1e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || | ||||||| || ||||||||||| || || |||||||| ||||| Sbjct 25985455 CAAGAAGTGCAGATCACAGAAGCTCGCTGTTTTTATGGCTTCCAGATTGCCATGGAAAAC 25985396 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||||||| |||||||||||||| || ||||| || ||||| |||||| Sbjct 25985395 ATTCATTCAGAAATGTACAGTCTGCTTATAGACACTTACATAAAAGAT 25985348 >seq1 Length=270692262 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 41046 TTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTG 41105 |||||||| || || ||||||||| | || || || || ||| ||||| || || Sbjct 186506300 TTGATGGCTTTACCCCCTTGTCATGCTCTCTGCCAATTCTATGTTGTAAATGGCGAGCTT 186506241 Query 41106 TCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCG 41165 || || || ||||||| ||||| || || ||||||||||| || || || || || || Sbjct 186506240 TCTTGCCAGCTGTATCAGAGATCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCC 186506181 Query 41166 AGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 |||||| | |||||||||||||||||||| || || || Sbjct 186506180 AGTTATTCACTGCTCACGTATATGATTGCTCATGTGAC 186506143 Score = 102 bits (112), Expect = 6e-17 Identities = 98/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 ||||| || | || || ||||| | |||||||| |||||||| |||||||| ||||| Sbjct 235936000 GGAGA--GAGTGGTTGCCTTTGCTGCAGTGGAAGGAATTTTCTTCTCAGGATCTTTTGCT 235935943 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||||||||||| | ||||| |||| |||||||||| |||| || || |||||| | Sbjct 235935942 GCCATATTTTGGCTGAAGAAGAGAGGCCTGATGCCTGGACTGACTTTCTCCAATGAGCTC 235935883 Query 44243 ATAAG 44247 || || Sbjct 235935882 ATTAG 235935878 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||| || | |||||||| || ||||| ||||| ||||| ||| ||| |||||| Sbjct 235941431 CAGGAAGTGCAGATCCCAGAAGCTCGCTGTTTCTATGGTTTTCAGATTCTCATTGAAAAT 235941372 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||| || || ||||||||||| || ||||| || |||||||||||| Sbjct 235941371 GTTCACTCAGAGATGTACAGTCTGCTAATAGACACTTACATCAAAGAT 235941324 >seq29 Length=37982970 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/127 (75%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 47225 TTTTT--AGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAG 47282 ||||| |||| | || | ||||| || ||| || ||||||| || || |||||||||| Sbjct 28786461 TTTTTCCAGGATTGTACAAGAAATCGGGTAAACTAGTATTTCTTGGTTTGGACAATGCAG 28786402 Query 47283 GAAAAACGGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAACCCTACAT 47342 | ||||| ||||||| |||||||| ||| | | | || | ||||| ||||||| Sbjct 28786401 GGAAAACCACATTACTGCACATGCTTAAAGATGACAGATTGGGACAGCATGTCCCTACAC 28786342 Query 47343 TACATCC 47349 ||||||| Sbjct 28786341 TACATCC 28786335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455660920350