Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq51 205 3e-47 seq36 140 1e-27 seq47 131 5e-25 seq40 123 8e-23 >seq51 Length=12259890 Score = 205 bits (226), Expect = 3e-47 Identities = 376/544 (69%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 349765 AAATATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGA 349824 |||| || | || ||||| | |||||||| || || ||||| || | || ||| |||| Sbjct 8338523 AAATGTTTTGATCTTTGACCTGGGTGGTGGCACCTTCGATGTGTCTATCCTCACAATTGA 8338582 Query 349825 AGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTT 349884 ||| || || |||||||| || | ||||| |||||||| || || ||||||||||| || Sbjct 8338583 AGATGGTATCTTTGAAGTGAAGTCCACTGCAGGTGATACCCACCTGGGTGGAGAAGACTT 8338642 Query 349885 TGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATA 349943 |||||| | | || || || || || || ||||| ||||| || | || | Sbjct 8338643 TGATAACAGAATGGTCAACCACTTCATTGCTGAGTTCAAGCG-CAAGCACAAGAAAGACA 8338701 Query 349944 TTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTT 350003 | | || || |||||| | || || || | || || ||||||||||| |||||| Sbjct 8338702 TCAGTGAAAACAAGAGAGCAGTTCGCCGTCTCCGCACAGCATGTGAACGTGCAAAGCGTA 8338761 Query 350004 CCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATT 350063 || | || |||| || || || |||||| ||||||||||| ||| |||| || | Sbjct 8338762 CCCTCTCCTCTAGCACGCAGGCCAGTATTGAGATTGATTCTCTCTATGAGGGCATTGACT 8338821 Query 350064 TCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTTAGAGC 350121 ||| | || || || || ||||| |||||||| | || | | ||||| || | | Sbjct 8338822 TCTACACCTCAATCACCCGAGCTCGCTTTGAAGAGT--TGAACGCTGATCTGTTCCGTGG 8338879 Query 350122 AACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGA 350181 || |||| |||||||| || | || ||||| || | |||| ||||| | Sbjct 8338880 TACTCTGGACCCTGTGGAGAAGGCCTTGCGGGATGCCAAGCTCGACAAATCCCAGATCCA 8338939 Query 350182 TGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGA 350241 ||| | || || |||||||| || || || || ||||| |||| | | ||| || Sbjct 8338940 TGACATTGTATTGGTTGGTGGGTCCACTCGCATCCCAAAGATTCAGAAACTCCTACAAGA 8338999 Query 350242 GTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATG 350300 || || ||||||||||| | | ||| | || ||||| ||||||||||| || |||| Sbjct 8339000 CTTCTTCAATGGCAAAGAGCTGAACAAGAGC-ATCAATCCTGATGAAGCTGTAGCTTATG 8339058 Query 350301 GTGC 350304 |||| Sbjct 8339059 GTGC 8339062 Score = 141 bits (156), Expect = 3e-28 Identities = 355/534 (66%), Gaps = 4/534 (1%) Strand=Plus/Minus Query 183259 CAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAAT-TCTTTGCCA 183317 || |||||||||| || ||||||||||| || || || | | | | | ||||||||| Sbjct 8339067 CACCTGCACCATAAGCTACAGCTTCATCAGGATTGAT-GCTCTTGTTCAGCTCTTTGCCA 8339009 Query 183318 TTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAAT 183377 || || || ||| || | || ||||| ||||| || | ||| || ||||| || ||| Sbjct 8339008 TTGAAGAAGTCTTGTAGGAGTTTCTGAATCTTTGGGATGCGAGTGGACCCACCAACCAAT 8338949 Query 183378 ACTACTTCATCGATATTACTTTTA-CTAATTTGTGAATCTTTTAAAACTTTTTCAACAGG 183436 || | |||| ||| | ||| | | ||| | ||| || | || || ||||| Sbjct 8338948 ACAATGTCATGGATCTGGGATTTGTCGAGCTTG-GCATCCCGCAAGGCCTTCTCCACAGG 8338890 Query 183437 GTCCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGA 183496 ||||| ||| | || | ||| |||||||| || | |||| || | || Sbjct 8338889 GTCCAGAGTACCACGGAACAGATCAGCGTTCAACTCTTCAAAGCGAGCTCGGGTGATTGA 8338830 Query 183497 TGaaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGA 183556 | | |||||||| || | ||| | |||||||| ||||| | || || || Sbjct 8338829 GGTGTAGAAGTCAATGCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGCGTGCTAGA 8338770 Query 183557 TGATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATT 183616 || | || | || || |||||||||||||| | || || || | || ||| || Sbjct 8338769 GGAGAGGGTACGCTTTGCACGTTCACATGCTGTGCGGAGACGGCGAACTGCTCTCTTGTT 8338710 Query 183617 ATCTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCT 183676 || | || |||| || || || | || || |||| ||| || || | | | ||| Sbjct 8338709 TTCACTGATGTCTTTCTTGTGCTTGCGCTTGAACTCAGCAATGAAGTGGTTGACCATTCT 8338650 Query 183677 TGTATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATAT 183736 ||||||| ||||| ||||| | || ||||| || ||||| | || |||||||| || Sbjct 8338649 GTTATCAAAGTCTTCTCCACCCAGGTGGGTATCACCTGCAGTGGACTTCACTTCAAAGAT 8338590 Query 183737 TCCGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 || |||||||| | | || || ||||| || || |||||||||| ||||| Sbjct 8338589 ACCATCTTCAATTGTGAGGATAGACACATCGAAGGTGCCACCACCCAGGTCAAA 8338536 Score = 102 bits (112), Expect = 2e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| ||||||| | |||||||||||||| || ||||| ||||||| || Sbjct 8338215 ACTGTTACTAATGCTGTGGTCACTGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCC 8338274 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 |||||||||||||| | || || || | || || || |||| || |||||||| || Sbjct 8338275 ACAAAAGATGCTGGTACTATCGCAGGTCTCAACGTACTCCGAATCATCAATGAACCAACA 8338334 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAAA 349748 ||||| || ||||| ||||| | || |||| Sbjct 8338335 GCTGCTGCTATTGCTTATGGCTTAGACAAAA 8338365 Score = 84.2 bits (92), Expect = 7e-11 Identities = 144/206 (70%), Gaps = 5/206 (2%) Strand=Plus/Plus Query 349383 TTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATC 349442 |||| ||||| ||||| || |||||| | || || ||| | || |||||| Sbjct 8337877 TTTTAGATGCAAAGCGGCTGATTGGTCGCAGATTCGATGATTCTGTTGTCCAGTCTGATA 8337936 Query 349443 TAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTG 349502 | || |||| ||||| ||||| || || || | || | |||| || |||| | Sbjct 8337937 TGAAGCATTGGCCTTTCACTGTGGTG---AATGATGCTGGCAGGCCAAAAGTTCAGGTGG 8337993 Query 349503 AATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTTTAGTT 349561 | |||||||| || | || | |||||||| |||||||||||||| |||||| | | Sbjct 8337994 AGTATAAAGGCGAG-ACCAAGAGCTTTTACCCAGAAGAAATTTCATCCATGGTTCTGACT 8338052 Query 349562 AAAATGAAGGAAATTGCTGAAGCATA 349587 || |||||||| ||||| ||||| || Sbjct 8338053 AAGATGAAGGAGATTGCAGAAGCCTA 8338078 >seq36 Length=28007247 Score = 140 bits (154), Expect = 1e-27 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| || || ||||| || || || || || || || | || || |||||| Sbjct 6677312 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 6677371 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| ||||| ||||| || ||||| ||| Sbjct 6677372 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCTTTGTCC 6677431 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || ||||||||||| ||||| | ||| || || || || || || | ||| Sbjct 6677432 TGGATCTTGGCTTTTACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 6677491 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || |||||||| |||||||| Sbjct 6677492 TTGCCCGTCAGGGTCTTTACAAAGATCTGCAT 6677523 Score = 116 bits (128), Expect = 1e-20 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || ||||| || || || || || || || | || || |||||| Sbjct 6676407 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 6676466 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| ||||| ||||| |||||||| ||| Sbjct 6676467 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 6676526 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || ||||| | ||| || || || || || || | ||| Sbjct 6676527 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 6676586 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || || |||||||| Sbjct 6676587 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 6676618 >seq47 Length=18085138 Score = 131 bits (144), Expect = 5e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || || || || || || || || ||||| | || || |||||| Sbjct 16075258 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 16075317 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| ||||| ||||| |||||||| ||| Sbjct 16075318 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 16075377 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || ||||| || ||||| ||||| | ||| || || || || || || | ||| Sbjct 16075378 TGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 16075437 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 16075438 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 16075469 >seq40 Length=20244435 Score = 123 bits (136), Expect = 8e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| |||||||| |||||||| || ||||| |||||||| ||||| |||||| | Sbjct 18791275 CAGCCTGAACAGCAGCACCATAGGCTACAGCCTCATCTGGATTAATGCCACGAGAAGGCT 18791334 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 ||||||||||||| || ||| | || || || ||||| || ||||| || || |||| Sbjct 18791335 CTTTGCCATTAAAGAACTCTTTCACCAGCTGCTGTATTTTGGGGATTCTTGTGGAGCCAC 18791394 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 | || | |||| |||||| |||| | ||| | | | ||||||| || ||||| | Sbjct 18791395 CAACAAGGACTATTTCATCAATATCAGATTTCTTCAGATCAGAATCTTCTAGCACTTTCT 18791454 Query 183430 CAACAGGGTCCATAGT 183445 |||||| | |||||| Sbjct 18791455 GAACAGGCTTCATAGT 18791470 Score = 120 bits (132), Expect = 9e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 350123 ACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGAT 350182 || ||| | ||||| | ||||| || ||||| | | || ||| | | |||||| Sbjct 18791470 ACTATGAAGCCTGTTCAGAAAGTGCTAGAAGATTCTGATCTGAAGAAATCTGATATTGAT 18791411 Query 350183 GAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAG 350242 ||| |||| | |||||||| || ||| | || || ||| | || ||| | | ||| Sbjct 18791410 GAAATAGTCCTTGTTGGTGGCTCCACAAGAATCCCCAAAATACAGCAGCTGGTGAAAGAG 18791351 Query 350243 TTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGT 350302 || |||||||||||||| |||||| | |||||||||||||| ||||| || |||||| Sbjct 18791350 TTCTTTAATGGCAAAGAGCCTTCTCGTGGCATTAATCCAGATGAGGCTGTAGCCTATGGT 18791291 Query 350303 GCTGCTGTTCAGGC 350316 |||||||||||||| Sbjct 18791290 GCTGCTGTTCAGGC 18791277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253041006210