Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 2e-13 seq21 86.0 7e-12 >seq1 Length=270692262 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/122 (78%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| ||||||||||| |||||||| || || || ||| || || ||||| Sbjct 235935987 GCCTTTGC-TGCAGTGGAAGGAATTTTCTTCTCAGGATCTTTTGCTGCCATATTTTGGCT 235935929 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||| | ||||| ||||| || |||| ||||||||| ||||| ||| | | ||||| Sbjct 235935928 GAAGAAGAGAGGCCTGATGCCTGGACTGACTTTCTCCAATGAGCTCATTAGCAGAGACGA 235935869 Query 60110 GG 60111 || Sbjct 235935868 GG 235935867 >seq21 Length=203625132 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 ||||| ||||||| || ||||||||||||| | ||||| ||||||||||||| | Sbjct 200397188 ATTTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGG 200397247 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCA 79206 ||||| | ||||||||| ||| || || || ||||||||| Sbjct 200397248 TTACAAGAGTCCTTGTACAGCATATAAGGGGTACCGGTCTCA 200397289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524320040800