Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq59 100 3e-16 seq1 82.4 8e-11 >seq59 Length=5908724 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | ||| || ||||| ||||| || |||||||| Sbjct 2853260 GTGAAGATGTATCGAGGGCTGGCAGAATCTTTCCCACCATGCAGCCTGGTACCAAACTGA 2853319 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || ||||||||||| || |||||| || ||||| |||||||| | | Sbjct 2853320 CCAAGGGGCTGCAGCAGGTTGAGGTTATTACTGCCCACAAAGTTCTGGGCCAAATTAATA 2853379 Query 152149 ATCGT 152153 || || Sbjct 2853380 ATGGT 2853384 >seq1 Length=270692262 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||| | ||| |||||||||||||||||| ||| | ||||| || || Sbjct 68992653 GTGAAAATATAACGGGGGCTAGCAGCATCCTTGCCACCATGAAGCCTGGTACCAAACTGG 68992712 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | || || || | ||||| || |||||||| || |||||||| || Sbjct 68992713 CCAATGGGTTGCAGAAGATTAACATTGTTACTTCCAACAAAGTTCTGGGCCAAGTTAACT 68992772 Query 117425 ATCGT 117429 || || Sbjct 68992773 ATTGT 68992777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215521186000