Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq33 104 3e-17 seq41 87.8 2e-12 >seq33 Length=109106476 Score = 104 bits (114), Expect = 3e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 32964 CAGTTTCATTTAGCAATAGGTCATACAGCAATGTCTATATATATAGATTGTCCGTTCCCT 33023 ||||| ||| | | | || |||||||| |||||| ||||| |||||||| || || Sbjct 62925069 CAGTTCCATGTGACTCTTGGCCATACAGCCTGGTCTATTTATATTGATTGTCCCTTTCCC 62925010 Query 33024 AGATGGATACAGTGGGCTGTTATTATATATTCTATCACCTTTATCATCCTTTTTGGCAAC 33083 | |||||| || |||| ||| ||| | ||| || |||||||||| |||| ||||||||| Sbjct 62925009 AAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTTATTCTCCTGTTTGGCAAC 62924950 Query 33084 TTTTA-TCTCAGGACATATAA 33103 || || | || |||||||||| Sbjct 62924949 TTCTACTATC-GGACATATAA 62924930 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 32689 TCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATAATGAGAAAGAAATTTAACC 32748 |||| ||||| || ||||| | || || | || ||||| || | ||||||||||||| Sbjct 62929205 TCTCCAAAGGAATTGAATACTTGGACACAGTATTTTTCATCCTGCGGAAGAAATTTAACC 62929146 Query 32749 AAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTTACTTTAGGATGGATAGGGA 32808 || | || || | ||||| || || |||| |||||||| || | | ||||| || | Sbjct 62929145 AAATCAGTTTCCTTCACGTTTATCATCATTACACCATGTTCACCCTGTGGTGGATTGGAA 62929086 Query 32809 TTAAATGGTTTGCAGGAGGACA 32830 | || ||| ||||||||||||| Sbjct 62929085 TCAAGTGGGTTGCAGGAGGACA 62929064 >seq41 Length=19343079 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 50971 ATTGGCTATAACTACCTGATGGTGATATTTACTTAACGCGTTCTTGGCTCTATCTATTAG 51030 ||| || || || |||||||| |||| || ||| || ||| || | |||| |||| Sbjct 9100711 ATTTGCGATTACCACCTGATGCCGATACTTCTCTAAAGCCTTCAGGGATTTATCAATTAA 9100770 Query 51031 TATTTCTTCATTTGTTTCTAGTTTAAAGGAAACAACAAATGCTTTTGGGGCCCATTCGTT 51090 || ||| || |||||| | ||||||||||| |||||| |||| ||||||||||| || Sbjct 9100771 GATGTCTGGATCTGTTTCCAATTTAAAGGAAATAACAAAAGCTTCAGGGGCCCATTCCTT 9100830 Query 51091 AACTAAATGGGCCATCATTTTAGGAACGGCCTTCAT 51126 |||| | | | |||||| || || |||||| Sbjct 9100831 GACTAGTGGAGATAGCATTTTTGGCACCATCTTCAT 9100866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603180272216800