Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq26 288 1e-72 >seq26 Length=42306551 Score = 288 bits (318), Expect = 1e-72 Identities = 608/888 (68%), Gaps = 27/888 (3%) Strand=Plus/Minus Query 13674 CTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATC 13733 |||||| ||| |||| | || || |||||| ||| || || |||||| || | | Sbjct 11107765 CTGAGCGAGGAGGAGGCGGCCTTCCCGCTCGCCTTCTCCATGGTCATCCACGACCAACTG 11107706 Query 13734 GAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCAC 13793 ||| ||||||||||||||||| | ||| | ||||| ||||||||| | |||||||| ||| Sbjct 11107705 GAGCTGTTCGAGCGCCTCCTGCGCGCCCTGTACGCGCCGCAGAACGTGTACTGCGTGCAC 11107646 Query 13794 GTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTC 13853 || ||| ||||| | || ||| ||| | | || ||| |||| | ||| |||||| Sbjct 11107645 GTCGACGCCAAGGCGCCCGCCGACTTCCTGCAGGCCGTGCGGGCCCTGGCCGCCTGCTTC 11107586 Query 13854 CCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTG 13913 || ||||| | ||||| ||||||| | ||| || |||| |||||| ||| || Sbjct 11107585 CCCAACGTCTTCGTGGCCAGCCGGCTGGAGCGCGTCGTCTACGCGTCCTGGTCGCGCCTG 11107526 Query 13914 CAGGCCGACCTCAGCTGCATGTCGGACCTG-GACGCCTCCCCCGTCAAGTGGAGGTACCT 13972 ||||||||||||| ||||||| ||||||| |||| |||| ||| | ||||| Sbjct 11107525 CAGGCCGACCTCAACTGCATGGAGGACCTGCTGCGCC-GGCCCGAGCCCTGGCGCTACCT 11107467 Query 13973 GCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCT 14032 ||||||| ||||| | |||||||| |||||||||||| |||||||||||||| || Sbjct 11107466 GCTCAACACCTGCGGCACCGACTTCCCCCTCAAGACCAACGCCGAGATCGTGCGGGCCCT 11107407 Query 14033 GAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCC-CAACCA-CAAGCTG 14090 | ||| || | ||| ||| | ||||| || | ||| || || ||| ||||| Sbjct 11107406 GCAGGTGCTCCGTGGCCGCAACAACATGGAG-TCG-GAGCAGCCCTCAGCCATCAAGCGC 11107349 Query 14091 CACCGCATCAGGAAGAGGCACGTGGTG---GCCAGCGGCGGCGTGGTGGTCAACACCGGC 14147 || ||| | | |||| |||| | | ||| ||||||| |||| || Sbjct 11107348 CAGCGCTGGCGCTACCAGCACCAGGTGTCTGAAACTGGCACCGTGGTG---CGCACCAGC 11107292 Query 14148 AGGAACAAGGCCCCGCCGCCGCTCAGGATCCCC---ATCTTTGCGGGAAACGCTTACTTT 14204 || |||| ||| |||||||| | | | || || || |||| || || ||| | Sbjct 11107291 GTGACCAAGAGCCCCCCGCCGCTGGGCAGCGCCGAAATGTTCACGGGCAATGCCTACATA 11107232 Query 14205 GCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAG-CCGGTGGCCCTGCTCAT 14263 | ||| || ||||| || ||| | |||||| ||| ||| || | ||| | || | | Sbjct 11107231 GTGGTGACGCGGGACTTTGTGCGCCACGTCCT---GGA-GAGCCCCGAGGCGCAGCGCCT 11107176 Query 14264 GC---ACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAG 14320 || |||| | |||||||||||||||| |||||||| |||||||||| | ||| | Sbjct 11107175 GCTGGCCTGGGCCCAGGACACGTACAGCCCGGACGAGCATGTGTGGGCCACGCTACAGCG 11107116 Query 14321 AATGTACGGGACGCCCGGGGGGATCCCCGTTC-ACGTCAAGTACGACACCTCGGACATGT 14379 || |||| || || | ||| | || ||||||| | || |||||| Sbjct 11107115 CCTG-CCGGGCGTGCCAGGCTCCTTGCCGCCCAACAACAAGTACCAGCTGTCCGACATGA 11107057 Query 14380 GGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCC 14439 ||| || | || ||||||||||| ||| ||||| || || | | ||||| | Sbjct 11107056 ACGCCCTGGCACGCTTAGTCAAGTGGCAGTACCTGGAGGGCGACATAATGCGGGGGGCAC 11106997 Query 14440 TGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACG 14499 |||||||| ||| ||||| ||| ||| ||||||||||||| ||| || ||| Sbjct 11106996 CCTACCCGCCCTGCACCGGCACGCACCGCCATGCCATCTGCATCTACGGCCTGGGGGACC 11106937 Query 14500 TGAAGTGGCTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 || ||| || ||| | |||||| | ||||||||||||||| Sbjct 11106936 TGCCCTGGATGCTCCAGC-AGCAACACCTGCTGGCCAACAAGTTCGAC 11106890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658738623603200