Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq36 114 1e-20 seq47 109 5e-19 >seq36 Length=28007247 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || ||||| || Sbjct 6676619 CATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 6676560 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || || |||||||||||||| || || || || Sbjct 6676559 TGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCA 6676500 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || ||||||| | ||| | ||||| ||||| Sbjct 6676499 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 6676440 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||| ||| | || |||| |||| || ||||||| Sbjct 6676439 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGG 6676392 >seq47 Length=18085138 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | || || || || ||||| || Sbjct 16075469 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16075410 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || |||||||||||||| || || || || Sbjct 16075409 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 16075350 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | ||| | || || |||||| Sbjct 16075349 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 16075290 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || ||||| || ||| | || |||| ||||| | |||||||| Sbjct 16075289 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTCAGGGGTGGC 16075242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918019446400