Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 138 1e-27 >seq1 Length=270692262 Score = 138 bits (152), Expect = 1e-27 Identities = 123/154 (80%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 |||||||| ||||| ||||||||||| | ||||| ||||| ||||| ||||| |||| Sbjct 186506146 ACATGAGCAATCATATACGTGAGCAGTGAATAACTGGCAATATTGAAAGGCACTCCTAGT 186506205 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| ||||| |||| ||||| |||||||| || ||||| ||||| | || |||||| Sbjct 186506206 CCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCGCCATTTACAACATAGAAT 186506265 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCA 6770 |||||||| | || || ||||| | ||||||| Sbjct 186506266 TGGCAGAGAGCATGACAAGGGGGTAAAGCCATCA 186506299 Score = 138 bits (152), Expect = 1e-27 Identities = 123/154 (80%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34575 TGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGT 34634 ||||||| | ||||| || || | |||||||||||||| || | ||||| ||||| | Sbjct 186506299 TGATGGCTTTACCCCCTTGTCATGCTCTCTGCCAATTCTATGTTGTAAATGGCGAGCTTT 186506240 Query 34635 CCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTA 34694 | |||||||| ||||| |||| ||||| ||||| |||| ||||| ||||| ||||| | Sbjct 186506239 CTTGCCAGCTGTATCAGAGATCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 186506180 Query 34695 GTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728 |||| | ||||||||||| ||||| |||||||| Sbjct 186506179 GTTATTCACTGCTCACGTATATGATTGCTCATGT 186506146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262007770400