Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 seq58 95.1 1e-14 >seq1 Length=270692262 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||| |||||||| || || ||||||||| | ||||| || ||||||||| Sbjct 144887287 GTAGTGGAGGAGCTGTTCCGAGACGGAGTGAACTGGGGGAGAATTGTGGCCTTCTTTGAG 144887228 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||| ||||| || ||||| | | || | ||||||| |||||| Sbjct 144887227 TTCGGTGGCGTGATGTGCGTGGAGAGTGTCAACCGGGAGATGTCGCCCCTCGTGGACAAC 144887168 Query 3365 ATTGCCGCGTGGATGACAGA 3384 ||||| | |||||||| || Sbjct 144887167 ATTGCAACATGGATGACGGA 144887148 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || |||| ||||||||||| || || | || || ||||| | ||| ||||| Sbjct 186506137 AGGCCCGTCACATGAGCAATCATATACGTGAGCAGTGAATAACTGGCAATATTGAAAGGC 186506196 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||| ||| | |||||||| |||| |||||||| ||||| || ||| || Sbjct 186506197 ACTCCTAGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCGCCATTTACA 186506256 Query 118654 ACATAAAACTG 118664 ||||| || || Sbjct 186506257 ACATAGAATTG 186506267 >seq58 Length=131974632 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 3244 AGTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGA 3303 ||| || || || || ||||||||||| || |||||||| | ||||| || ||||||| Sbjct 6427875 AGTAGTAGAGGAACTGTTCCGAGATGGAGTGAACTGGGGAAGAATTGTAGCCTTCTTTGG 6427816 Query 3304 GTTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAA 3363 ||| ||||| || ||||| ||||| | ||||| | || | ||||||| ||||| Sbjct 6427815 GTTCGGTGGCGTGATGTGCGTGGAGAATGTCAACCAGGAGATGTCGCCCCTCGTGGACAA 6427756 Query 3364 CATTGCCGCGTGGATGA 3380 |||||| | ||||||| Sbjct 6427755 CATTGCAACATGGATGA 6427739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414476446399480