Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq36 176 1e-38 seq47 163 7e-35 >seq36 Length=28007247 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 6676407 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 6676466 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| |||| ||||| |||||| Sbjct 6676467 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 6676526 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || ||||||||| | || |||||||| ||||| ||| Sbjct 6676527 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 6676586 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 6676587 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 6676618 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 6677312 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 6677371 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| |||| || || |||||| Sbjct 6677372 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCTTTGTCC 6677431 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || || || ||||||||| | || |||||||| ||||| ||| Sbjct 6677432 TGGATCTTGGCTTTTACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 6677491 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || ||||||||||| | |||||| || Sbjct 6677492 TTGCCCGTCAGGGTCTTTACAAAGATCTGCATCTT 6677526 >seq47 Length=18085138 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 16075258 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 16075317 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| |||| ||||| |||||| Sbjct 16075318 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 16075377 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | || ||||| || ||||| ||| Sbjct 16075378 TGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 16075437 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | |||||| || Sbjct 16075438 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATATT 16075472 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 210993 TGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 || |||||||| || | ||||| |||||||||||||| ||||| || || |||||| Sbjct 16075885 TGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTG 16075944 Query 211053 TCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 ||| | || ||||| || ||||| ||||| || || || ||||| ||||| | |||| Sbjct 16075945 TCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGC 16076004 Query 211113 ATTTT 211117 || || Sbjct 16076005 ATATT 16076009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150960385550