Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq36 136 9e-27 >seq36 Length=28007247 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || ||||| || || |||| ||||| |||| || || | ||||| Sbjct 6676406 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 6676465 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || ||||| || ||||| ||||| ||||| Sbjct 6676466 TTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 6676525 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || |||||||| || ||||| || | ||||| || Sbjct 6676526 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 6676585 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || || | ||| | ||||| Sbjct 6676586 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 6676618 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || || || ||||| || || |||| ||||| |||| || || | ||||| Sbjct 6677311 CAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 6677370 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || ||||| || ||||| || || ||||| Sbjct 6677371 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCTTTGTC 6677430 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| || ||| || |||||||| || ||||| || | ||||| || Sbjct 6677431 CTGGATCTTGGCTTTTACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 6677490 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||| || |||| || | ||||| || Sbjct 6677491 CTTGCCCGTCAGGGTCTTTACAAAGATCTGCATCTT 6677526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530130448580