Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq33 102 7e-17 seq1 98.7 8e-16 >seq33 Length=109106476 Score = 102 bits (112), Expect = 7e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||| || || || || |||||||| || | ||| |||||||| ||||| || || Sbjct 25982269 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 25982328 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 | |||||| || | ||||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 25982329 AACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 25982388 Query 4692 ACTA 4695 |||| Sbjct 25982389 ACTA 25982392 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 ||| |||| || ||||||||||| || || || |||||||| ||||| || ||||| || Sbjct 25985345 TGGATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCAT 25985404 Query 4868 AGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 |||||||| || || ||||| || | ||||||||| | || ||||| Sbjct 25985405 GGCAATCTGGAAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTC 25985452 >seq1 Length=270692262 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| || || || || || || | ||| ||||| | |||||||| || Sbjct 235935869 TCGTCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 235935928 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||||||||| || ||||| || || || ||||| || ||||| || || ||||| || Sbjct 235935929 AGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACTGCAGCAAAGGCA 235935988 Query 4692 AC 4693 || Sbjct 235935989 AC 235935990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049235673310