Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq33 98.7 1e-15 seq21 93.3 6e-14 seq1 84.2 3e-11 >seq33 Length=109106476 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | || |||||||| ||||| || ||||||| ||| | ||| || Sbjct 25982269 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 25982328 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 | |||||| || | || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 25982329 AACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGC 25982387 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||| | |||||| ||||| | ||||| |||||||| || ||||| ||||| || || Sbjct 25985348 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 25985407 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| || || |||||||| | |||||||||||||| || || Sbjct 25985408 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTC 25985452 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | |||||||| || || | ||||| || || || || |||||| Sbjct 25980934 GACATGACTCCCATCCTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTTGTCTTGCCT 25980993 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGC 47935 || | ||| || || |||||||| ||||||||||| |||| Sbjct 25980994 TCAAGTGAAATGTTCTCCATAAAGTCAAATGGATTCTCTGC 25981034 >seq21 Length=203625132 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| || | |||| || ||||| || ||||||||||| || || | ||| Sbjct 200389017 TGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGATGGAT 200389076 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 ||||| || |||||||| ||||| || |||||||||||||| || Sbjct 200389077 TCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGG 200389120 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| ||||| || ||||| ||||| |||||||| |||||||| | |||||| Sbjct 200401114 GTGCCCGCATTGAATAAAGTGGGAGAGGCATGGGTAAACCACTTTTCAGACAAGAGATTG 200401173 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| | | || ||||| || || || || || | || | ||||| | Sbjct 200401174 TATGTTTCAATTGAAGCATCAATGTCATTTTTGTGGATGCCCACAGAGACCCTCATCAGC 200401233 Query 78519 ATATGCTGAGG 78529 || ||||| || Sbjct 200401234 ATGTGCTGGGG 200401244 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 77999 CTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCT 78058 || ||| |||||||| ||||||||||| ||||| || |||| || || || | | || Sbjct 200398395 CTCAACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCG 200398454 Query 78059 ATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCA 78118 || || || || || || ||||| || | ||| |||||||| | ||||| | ||||| Sbjct 200398455 CTGCTCCTCCTTCCCGGTGTTCTTCTTCAAATCCAGAAACTCAAAGATATCCAAGTGCCA 200398514 Query 78119 TGGTTCTAGATATATTGCCATAACTCCAGGTC 78150 || || || || || || | | | ||||||| Sbjct 200398515 CGGCTCCAGGTAAATGGCAAAAGCCCCAGGTC 200398546 >seq1 Length=270692262 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTG 48698 || ||||| |||||||| || ||||| | ||| | ||| ||||| |||||||||||| | Sbjct 235949085 ACCTCTTCTGCTGTCCAGAAGGATGCTTGTGCCTGTTTGTACATTTTCCATATATCAGGG 235949144 Query 48699 TATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTT 48737 || ||||| ||||| || ||||||| | || |||||| Sbjct 235949145 TACTGGATAGGGAAGATGACAAATCGACGAGGGTTTTTT 235949183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668192164800