Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq40 158 2e-33 seq22 147 3e-30 >seq40 Length=20244435 Score = 158 bits (174), Expect = 2e-33 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 |||| ||| | | ||||||||||||||||||||||||||| | |||||||||||| || Sbjct 17400550 CGAAGCCCGTGGCGCCGCCGAAGGTGCTGGGCTTCCAGTACTCGGGGGAGCAGATGGGGT 17400491 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 || ||| || || ||||||||||| || ||||| | ||| | |||||||| ||||||| Sbjct 17400490 TCCCCAGCAGCCCCTTGAGGGAGAAGGGGGCCCCGATCTCCACCATGCTCTCCCCGAAGA 17400431 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 ||||||||| | ||||| |||| || | || | ||| | ||||| || |||| || Sbjct 17400430 TGGCGTTGGCTTGCGGCTTCTCCAGCAGCAGCCCCGGGTAGAACTCCAGGGCGTCGATGT 17400371 Query 8541 CTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | ||||| || || || | || || |||||| ||||||| Sbjct 17400370 CGCCGTACAGCTCCTCCAGCTGCGCCGCCTTCTCCTCCTCTCCTG 17400326 Score = 116 bits (128), Expect = 5e-21 Identities = 181/258 (70%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | || ||| || || |||||||| || |||||||| |||||| || || Sbjct 17398845 TCACCAATGAGGACGAGCCGGGTCGTCTGGAAGAGCTGCTCGTCGCTCCATGTCGGGTGC 17398786 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || || ||||| | ||||| || | |||||| || | |||||||| || ||||||||| Sbjct 17398785 TCCTGCTTCAGCAGGTCGCAGACGCGGTTGTGCTCGCGGAGCCAGAGGGTCGCGTACATC 17398726 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGG-- 9409 || ||||| || | || || || |||| || || || ||||| ||| | |||| Sbjct 17398725 ATCAGCCCGGGCAGGAGCCCGAAGACCTCCTGGCCCACGGCCAGGCGCTGCTCCTCGGCG 17398666 Query 9410 --GCACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACAT 9467 || || ||| ||||||||||||||| || | | |||| ||| || |||| Sbjct 17398665 GTGCCGTTGGGG----TAGATCATGTGCACCGGGGCCTGGAGCACCGTGGGCGGGTACAC 17398610 Query 9468 TTCACCGTCAATCATCTG 9485 || ||||| | || ||| Sbjct 17398609 CTCCCCGTCCACCACCTG 17398592 >seq22 Length=66201059 Score = 147 bits (162), Expect = 3e-30 Identities = 212/299 (71%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| || ||| | ||||| || || | | || | ||||| || Sbjct 26666721 AAGGGACAACCCTTTACATTGTTGCAGACAAGTTTTTGCAGGGAGGCAGTGTTGACTATT 26666662 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 | || || || ||| || || ||||| |||||||||||| | || |||||||| | Sbjct 26666661 TCAAAGCCTACTCTTCCACCAAAAGTGCTAGGCTTCCAGTACTCAGGAGAGCAGATAGCA 26666602 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| |||||||| | ||||| || || || | ||| | ||| ||||||| ||| Sbjct 26666601 TTTCCCATCAGGCCTTTCAACGAGAATGGTGCTCCAAGCTCTACCATGGTCTCACCAAAG 26666542 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 ||||| |||||||||||||||||||| | || | |||||||||| || || | | Sbjct 26666541 ATGGCTCCTGGACGGGGCTTTTCCACCAACAGACCAGGATACAGCTCCATTGCATCAATG 26666482 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGTTTTATTAATAAA 8598 ||||| ||||| | | ||| || || || || ||||||||| |||||| ||| Sbjct 26666481 TCTCCATAAAGCTCTTCCAATTCAGCTGCCATTTCTTTTTCTCCTAAAATATTAACAAA 26666423 Score = 109 bits (120), Expect = 8e-19 Identities = 171/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| || || ||||| | || || ||| |||||||||||| || || || || Sbjct 26664359 ATGAGTCTGGTAGTTTGGAATAACTGTTCATCATCCCATTCTGGATGCTCCTGCTTAAGG 26664300 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||| ||||||||||| ||||| || |||||||| | || || Sbjct 26664299 ATGTCACAGACCCGGTTGTGCTCCCTGAGCCATATAGTAGCATACATCATTAAACCTGGG 26664240 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||| ||||| | || || || |||| | || | || || || || | |||||| Sbjct 26664239 ACCAGACCAAACACTTCCTGTCCTACAGAGAATCGTAGGTGCTCAGGAACATGAGGAGGA 26664180 Query 9424 TAGATCA--TGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCA 9481 || | || | ||| | | | || || || || || |||||||| || |||||| Sbjct 26664179 TATAGCATTTCTGCTTCAGTA--TCCTTCACTATTGGAGGGTACATTTCTCCACCAATCA 26664122 Query 9482 TCT 9484 ||| Sbjct 26664121 TCT 26664119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716876172732800