Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq36 145 2e-29 seq47 134 3e-26 >seq36 Length=28007247 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || ||||||||||||||||| || ||| Sbjct 6676615 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGA--GCCCAGTG 6676558 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| |||||||||||||| || || || ||||||| Sbjct 6676557 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGC 6676498 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 6676497 AGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 6676438 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 6676437 TCCAGAAGGAGTCCACCCTGCACCTGGT 6676410 Score = 136 bits (150), Expect = 1e-26 Identities = 165/222 (74%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | || || || || || || || || || || ||||||||||||| Sbjct 6677531 AGGTAAAGATGC---AGATCTTTGTAAAGACCCTGACGGGCAAGACCATCACCCTCGAGG 6677475 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| ||||||| ||||| || ||| ||||| ||||||||||| || || Sbjct 6677474 TGGA--GCCCAGTGACACCATTGAGAATGTAAAAGCCAAGATCCAGGACAAAGAGGGCAT 6677417 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| | || ||||| || || || ||||| |||||||| | || || Sbjct 6677416 TCCCCCTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCT 6677357 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||| |||| || || || || |||||||| || Sbjct 6677356 GTCCGACTACAACATCCAGAAGGAGTCCACCCTGCATCTGGT 6677315 >seq47 Length=18085138 Score = 134 bits (148), Expect = 3e-26 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| |||||||| || ||| Sbjct 16075466 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 16075409 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||||||||| || || || ||||||| Sbjct 16075408 ACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGC 16075349 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 16075348 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 16075289 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || ||||| || ||||| || || || | ||||| Sbjct 16075288 TCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTCAG 16075249 Score = 91.5 bits (100), Expect = 4e-13 Identities = 94/121 (78%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| |||||||| || ||| Sbjct 16076003 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 16075946 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||||||||| ||||| || ||||||| Sbjct 16075945 ACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAGC 16075886 Query 178042 A 178042 | Sbjct 16075885 A 16075885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730120403580