Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq49828 100 3e-16 seq7215 100 3e-16 >seq49828 Length=5021 Score = 100 bits (110), Expect = 3e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| |||||||| |||||||| ||||||||||| || |||||||| ||||| ||||| Sbjct 4632 ATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTGG 4573 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569 || |||||||| || || || || | | ||||||||| Sbjct 4572 AAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 4535 >seq7215 Length=34700 Score = 100 bits (110), Expect = 3e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| |||||||| |||||||| ||||||||||| || |||||||| ||||| ||||| Sbjct 18657 ATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTGG 18716 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569 || |||||||| || || || || | | ||||||||| Sbjct 18717 AAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 18754 Score = 100 bits (110), Expect = 3e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| |||||||| |||||||| ||||||||||| || |||||||| ||||| ||||| Sbjct 22605 ATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTGG 22664 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569 || |||||||| || || || || | | ||||||||| Sbjct 22665 AAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 22702 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 |||||||| ||||| || || | || || ||||| |||||||||||||| || || | | Sbjct 15026 ACACCCATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGA 15085 Query 15962 GATATATTTTCCATAAAATCAAAGGGATT 15990 || ||||| |||||||| ||||| ||||| Sbjct 15086 GAGATATTCTCCATAAAGTCAAATGGATT 15114 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||| || || || || || |||||||| | || ||||| |||||||||||| Sbjct 16590 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCTTT 16649 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | ||| ||||| | ||||| || || |||||||| || || ||||| | ||||| || Sbjct 16650 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 16709 Query 16346 ATTAATCGTTC 16356 | || ||||| Sbjct 16710 ACTACACGTTC 16720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510224926817760