Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2885 100 2e-16 seq1118 87.8 1e-12 >seq2885 Length=50683 Score = 100 bits (110), Expect = 2e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||||||||| || || || || |||||||||||| ||||||||| || || |||||||| Sbjct 45121 CTTTAGTTCTTTACTAAGTACTACATTAATTCTGTTTTTTAAAGGACGATTTTTCTCAGG 45180 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394 || |||||||||||||| ||||||| || || | ||| || || Sbjct 45181 GATGGAGAACCAAGTCTTCCTACCCATTATGACCACATTTTGCTT 45225 Score = 91.5 bits (100), Expect = 1e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||| ||||||| | ||||||| |||||||||||| || |||| ||||||||| ||||| Sbjct 30765 AAGTCTGTATTTTTTAAGATCAATTTCTGGAAAAAATGTATCACTTTCAAAGTCATGCAT 30824 Query 4116 GATCCTAGTCACAAACAGTT 4135 || || ||||||||||||| Sbjct 30825 AATTCTTGTCACAAACAGTT 30844 >seq1118 Length=41628 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| || || ||||| ||||| |||||||| || ||||| | ||| || | ||||||| Sbjct 12941 CTTTGTACTCGGCTCCAAAATGTCTCCACTGGAAGCCATAAATAGGACCTAAGTCTCCTT 12882 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||| |||| || |||| ||||| ||| | ||| ||||| |||||||||| Sbjct 12881 CCTCTCTAGAGAAAAATCCCTGTTTGTCTAAGAATTGCCGAGAACCATTGGCATCCCAAA 12822 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTT 102180 | | || || || || |||||||| Sbjct 12821 TCTTAACTCCCTTAGCAGAAAGCTCTTT 12794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360431989299068