Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq7215 114 2e-20 seq177 102 1e-16 seq49828 93.3 5e-14 seq158980 86.0 7e-12 >seq7215 Length=34700 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||||||||| | || || ||||| || ||||| ||||| || || || || | Sbjct 16588 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCT 16647 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 16648 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 16707 Query 24277 C 24277 | Sbjct 16708 C 16708 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 24691 ||| ||||| ||||||| ||||| |||||||| || || ||||| | |||||||||||| Sbjct 26458 CACCTCTTCAGCTGTCCAGAATGAAGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATG 26517 Query 24692 ATATTGAATTGGAAAAATAACAAA 24715 |||||||| |||||||| ||||| Sbjct 26518 GTATTGAATAGGAAAAATGACAAA 26541 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 24386 TTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 24445 ||| ||| ||| |||| ||| |||||||| | | |||||||||||| ||||||||||| Sbjct 18641 TTCTTTAGAATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 18700 Query 24446 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || ||||| || || || || |||||||| | || || || | ||||||||| Sbjct 18701 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 18755 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 24386 TTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 24445 ||| ||| ||| |||| ||| |||||||| | | |||||||||||| ||||||||||| Sbjct 22589 TTCTTTAGAATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 22648 Query 24446 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || ||||| || || || || |||||||| | || || || | ||||||||| Sbjct 22649 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 22703 >seq177 Length=121252 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| ||||| | ||| ||||| || || || || ||||||| || | ||| || Sbjct 54722 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 54663 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||||||||||| ||||| | ||||| ||||| |||||||| || || ||||| ||| Sbjct 54662 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGCA 54603 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 54602 ACCACTCTTTCACC 54589 >seq49828 Length=5021 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 24691 ||| ||||| ||||||| ||||| |||||||| || || ||||| | |||||||||||| Sbjct 778 CACCTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATG 719 Query 24692 ATATTGAATTGGAAAAATAACAAA 24715 |||||||| |||||||| ||||| Sbjct 718 GTATTGAATAGGAAAAATGACAAA 695 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 24386 TTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 24445 ||| ||| ||| |||| ||| |||||||| | | |||||||||||| ||||||||||| Sbjct 4648 TTCTTTAGAATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 4589 Query 24446 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || ||||| || || || || |||||||| | || || || | ||||||||| Sbjct 4588 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 4534 >seq158980 Length=729 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 54770 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 54829 || || | ||| || ||||||||||| ||||| || || || || | || || || ||| Sbjct 570 CTGAAGACTTTCTTCGTTTCTTTGTGCAGATTGGAGACAGCGATCCGTGCAGCCAGGATG 511 Query 54830 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAAT 54889 || || || || | | || || ||||||||| | ||||| | ||| ||||||| | Sbjct 510 GCGTAGTCAGGGTACTTGGTGGTGAGAGTGGCTGCCGTCTCGGCCGCCAGCGTGTCCAGT 451 Query 54890 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 54941 || ||||| || || || | || | || ||||| |||||||| | |||| Sbjct 450 TCGACCGTGGTCACCCCGCTGTAGAGGCCCTGGATCACCTTCATGGTGATTT 399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592340692616640