Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq23592 89.7 6e-13 >seq23592 Length=33632 Score = 89.7 bits (98), Expect = 6e-13 Identities = 173/253 (68%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 |||||| || || ||||| || | ||| |||||||||| || ||||| |||| || Sbjct 30967 GAACTTTTCAAAATTCCATGCGATGTCACTGCGGCACACAGGGGACCAAATTATGAACTT 30908 Query 83203 GGGGTCGCTCACGAGCGTGCTCATG-TCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGA 83261 || ||| ||| || | | || | || || || | |||| || ||| |||| Sbjct 30907 TGGATCGGTCATCAGGGA-CACAGGATCATCATGTGGGGTAGGCAAGGATTCTTTCAGGA 30849 Query 83262 AGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGT 83321 ||| || ||||| || || | || || || || |||||||| || | |||| Sbjct 30848 GCTTGAAAAGAGGATGAGCATTTTCCCCATTAACTTCACACTTCTCAAACACGGGGAAGT 30789 Query 83322 TCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCT 83381 | ||||| | || || ||||||||||| | ||||||||| || ||||||| |||| Sbjct 30788 TGGGCTCATATCCATTGCCAGGACGGACATATTTCAGGGAATTCAGGATCTCGTCATTGG 30729 Query 83382 GGGCGTTTTCCTG 83394 ||| |||||||| Sbjct 30728 TGGCATTTTCCTG 30716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607380829962720