Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq29087 136 4e-27 seq86049 93.3 4e-14 >seq29087 Length=41947 Score = 136 bits (150), Expect = 4e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || || ||||||||| | || || || ||| Sbjct 34849 ATGCAGATCTTYGTGAAGACCTTGACTGGRAAGACCATCACCCTGGAGGTGGAGCCCAGT 34908 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | || || || ||||| || | || || Sbjct 34909 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCA 34967 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| |||||||||||||||||| || | ||||||||| ||||||||| Sbjct 34968 GCAGAGGCTGATCTTCGCGGGCAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 35027 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || ||||| || | || ||||||| || Sbjct 35028 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTCCGTCTGAGGGGTGG 35075 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||| || || || || || | || || || ||||||||| | || || || | Sbjct 34617 AAAAATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCC 34676 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || |||| | | | | |||||| || || | || || || ||||| || | || Sbjct 34677 CAGTGACACCATTGAGAATGTCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCTCCTGA 34736 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| | || |||| || ||||| |||||||| || | ||||||||| |||||| Sbjct 34737 TCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTA 34796 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| |||| || ||||| || | || ||||||| || Sbjct 34797 CAACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTCCGTCTGAGGGGTGG 34847 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || || ||||||||| | || || || ||| Sbjct 35077 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 35136 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || || ||||| || | || ||| Sbjct 35137 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 35196 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| |||||||||||||||||| || | || |||||| |||||||||| Sbjct 35197 CAGAGGCTGATCTTCGCGGGCAAACAGCTGGAAGATGGCCGTACCCTCTCCGACTACAAC 35256 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || || ||||| || | || |||| || ||| Sbjct 35257 ATCCAGAAGGAGTCTACCCTCCATCTTGTCCTCCGTCTGAGAGGAGGC 35304 >seq86049 Length=15963 Score = 93.3 bits (102), Expect = 4e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACG 40887 |||||||||||||| || | ||||| ||| |||||||||||||||||||||| |||| Sbjct 2343 GGCAAACAGCTGGAAGATGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCCACC 2284 Query 40888 CTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| || |||| |||||||| || Sbjct 2283 CTCCATCTTGTCCTGCGTTTGAGGGGTGG 2255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514020877423680