Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1118 87.8 1e-12 >seq1118 Length=41628 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 || || ||||||||||| ||||| ||||| ||||||| ||| || | ||||||||| ||| Sbjct 12936 TACTCGGCTCCAAAATGTCTCCACTGGAAGCCATAAATAGGACCTAAGTCTCCTTCCTCT 12877 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGC 97521 ||| | || || | || ||||| | || ||| ||||| ||||||||||| | Sbjct 12876 CTAGAGAAAAATCCCTGTTTGTCTAAGAATTGCCGAGAACCATTGGCATCCCAAATCTTA 12817 Query 97522 ACACCAGATGCTGCAAGCTCTTT 97544 || || || | ||||||||| Sbjct 12816 ACTCCCTTAGCAGAAAGCTCTTT 12794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345997596622760