Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq154117 98.7 1e-15 seq12721 98.7 1e-15 seq99526 96.9 4e-15 seq73036 96.9 4e-15 seq37141 96.9 4e-15 seq11403 96.9 4e-15 seq23788 93.3 5e-14 seq5030 82.4 9e-11 >seq154117 Length=791 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 28 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 87 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 88 TACTAACGAGGA 99 >seq12721 Length=27645 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 25340 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 25399 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 25400 TATACTAACGAGGA 25413 >seq99526 Length=13661 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 6073 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 6014 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 6013 ATACTAACGAGGA 6001 >seq73036 Length=2985 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1388 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 1447 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1448 ATACTAACGAGGA 1460 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 2606 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 2665 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 2666 ATACTAACGAGGA 2678 >seq37141 Length=11682 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3209 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 3150 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 3149 ATACTAACGAGGA 3137 >seq11403 Length=17709 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1859 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 1918 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1919 ATACTAACGAGGA 1931 >seq23788 Length=19405 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 60067 TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 60126 ||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||| Sbjct 16580 TCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTAT 16521 Query 60127 ACTACCGAGGA 60137 |||| |||||| Sbjct 16520 ACTAACGAGGA 16510 >seq5030 Length=25832 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 60073 GCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACC 60132 || |||||||||||||||||||||||| |||||||| | ||||| |||||||||||| Sbjct 14791 GCTGGGAATCGAACCCTGGTCTCCCGCATGACAGGCAGGGATACTTACCACTATACTAAT 14850 Query 60133 GAGGA 60137 ||||| Sbjct 14851 GAGGA 14855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570487638035040