Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq29087 89.7 3e-13 >seq29087 Length=41947 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || |||| | || |||| ||| ||||| ||||| Sbjct 35267 TCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGTTTGCCCGCGAAG 35208 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| |||||| || || | || ||||| || ||||| ||| | || Sbjct 35207 ATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTC 35148 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | || || |||| |||||||| || || || | || |||||| Sbjct 35147 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACA 35088 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 35087 AAGATCTGCATC 35076 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || ||| | || |||| ||||||||| || || Sbjct 34811 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 34752 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| |||||| || || | || ||||| || ||||| ||| | || Sbjct 34751 ATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTAGCCTTGACATTC 34692 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | || || |||| |||||||| || || || | || |||||| Sbjct 34691 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACA 34632 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 34631 AAGATCTGCAT 34621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322339368414080