Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq7215 116 3e-21 seq49828 107 2e-18 seq177 105 6e-18 >seq7215 Length=34700 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | ||| || ||||| ||||| || ||||| || |||||||| || Sbjct 16590 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCTTT 16649 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||||||||| | ||||| || ||||||||||| || ||||||||||| |||||||| Sbjct 16650 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 16709 Query 16379 ACCAATCGCTCACC 16392 || | || ||||| Sbjct 16710 ACTACACGTTCACC 16723 Score = 107 bits (118), Expect = 2e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 |||||||||||| || |||||||||||||||||||||||||| |||||||| || ||||| Sbjct 18656 AATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTG 18715 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || ||||| || || | ||||| | | ||||||||| Sbjct 18716 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 18754 Score = 107 bits (118), Expect = 2e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 |||||||||||| || |||||||||||||||||||||||||| |||||||| || ||||| Sbjct 22604 AATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTG 22663 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || ||||| || || | ||||| | | ||||||||| Sbjct 22664 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 22702 >seq49828 Length=5021 Score = 107 bits (118), Expect = 2e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 |||||||||||| || |||||||||||||||||||||||||| |||||||| || ||||| Sbjct 4633 AATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTG 4574 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || ||||| || || | ||||| | | ||||||||| Sbjct 4573 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 4535 >seq177 Length=121252 Score = 105 bits (116), Expect = 6e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 |||| ||| ||||| || ||| || |||| ||| | |||||||||| | | || Sbjct 60704 AAAAGTCAGCATCTAAAGTAAATACCTTATTATTTGCTTCGGACATAACTGCAAAATGTT 60645 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 ||||||| ||||||| | ||||||||||| ||||||||||| | ||||| ||||||| Sbjct 60644 GATATTCTGAAACTCTCCTCTCAAAGAAATTGGTTTTTCCTTCCAGGGAAATGTTTTCCA 60585 Query 16008 TAAAATCAAAAGGATTTTTTG 16028 | || |||||||| |||| || Sbjct 60584 TGAAGTCAAAAGGGTTTTCTG 60564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461436266464800