Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq5000 414 7e-111 seq18652 116 3e-21 >seq5000 Length=25908 Score = 414 bits (458), Expect = 7e-111 Identities = 699/1001 (70%), Gaps = 16/1001 (2%) Strand=Plus/Plus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGA--AG-TTCATACAG 107684 ||||| ||| |||||| || ||| || ||| || | |||||| || ||||| || Sbjct 5248 TACCTGAACGTAACCAAGGATTGTCAGAACTTTAAAG---AAAGGAGAAGATTCATTGAG 5304 Query 107685 TTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAG 107744 |||| |||||| |||| || | ||||||| ||||| || || |||||| ||||||| Sbjct 5305 TTCCACCTGAGTGAAGAGGAAGAAAACTTCCCTATTGCTTATTCCATGGTGATCCATGAA 5364 Query 107745 AAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGT 107804 ||||| || | |||||| || | || || || | ||| ||||||||| |||| ||| Sbjct 5365 AAGATCGAGATGTTTGAAAGGTTATTGAGATCCACCTTTGCTCCTCAGAACGTATATTGT 5424 Query 107805 GTCCACGTGGATGTGAAGTCCCCAGAGACTTT--CAAAGAGGCGGTCAAGGCCATTATTT 107862 ||||||||||| || || || || ||||| |||| || || || |||||||| | Sbjct 5425 GTCCACGTGGACAGCAAATCTCCCGA-ACTTTTCCAAAAAGCCGTTC-AGGCCATTGCCT 5482 Query 107863 CCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGT 107922 |||||||| |||||| || |||| |||| || ||||| |||||||| |||| Sbjct 5483 CCTGCTTCGACAATGTTTTTCTGGCTTCTAAGCAGGAGAGCGTGGTCTATGCCTCTTGGT 5542 Query 107923 CCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGA 107982 | || || |||||||| |||||||| ||| | ||| |||| || ||| |||| |||| Sbjct 5543 CGAGGGTCCAAGCTGATCTGAACTGCATGAAGGACCTGCTTCAAAGCAAGGTGCATTGGA 5602 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 |||| | ||||| || || ||||| || ||||| || ||||| || | ||||| |||| Sbjct 5603 GGTACCTCCTGAACACCTGTGGGACCGATTTCCCTATCAAGACGAACACAGAGATTGTCC 5662 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCa 108102 ||||| || || |||| || || |||| |||||||| ||| ||| || | | Sbjct 5663 GAGCCCTAAAACTGCTGAACGGGAAAAACAACATGGAGTCCGAGAAACCATCATTCTATA 5722 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACA-CACTGTACCCTACCAGCAAG 108161 |||| || ||||||||||||| | | || ||||| | | || || || |||| | | Sbjct 5723 AAAAGAACCGCTGGAAATACCACCACGAAGTGACCAATAGCATCGT-CCAGACCAAGATG 5781 Query 108162 ATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCC 108221 | ||| ||| || || | || | |||||| ||| || |||||||| | |||| Sbjct 5782 ACAAAGAGCCCCCCTCCCCAAAAGTCTCCCATGCACACTGGCAATGCCTACATCGTGGTT 5841 Query 108222 TCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGG 108281 | | | |||||||| || |||| || | || | || | || | || ||| Sbjct 5842 ACCAGGGAGTTTGTCCAGCACCTCTTCGAGGATCCGACCGCCAGGCGCTTGATCGAGTGG 5901 Query 108282 GTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGG 108341 ||| || || || ||||| || || || |||||||||||| | || || ||| | Sbjct 5902 TCCAAGGATACGTACAGCCCGGATGAGCATCTCTGGGCCACCTTGCATCGGATGCCGGAG 5961 Query 108342 ATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCC 108401 |||| ||||| || ||| | | ||| ||| || || ||||||||| || || ||| Sbjct 5962 GTGCCAGGCTCAGTCCCTTCCAATGACAAATATGACCTCACAGACATGAACGCTATTGCC 6021 Query 108402 AGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCC 108461 | || || |||||| ||| ||| || || |||||| ||| || ||||| || || Sbjct 6022 CGACTGGTAAAGTGGTCCTACATCGAAGGGGACATCAGCAAGGGAGCCCCTTA--CAGCC 6079 Query 108462 --TGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGA 108519 || |||||| | | ||| |||| ||||| | || || || ||||| |||| Sbjct 6080 AGTGTTCTGGAGCCTACCGGCGGGCAGTCTGCGTGTATGGATTTGGAGACCTCCCCTGGC 6139 Query 108520 TTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCC 108579 | ||| | || |||||||| || |||||||| ||||| || || || || ||||| Sbjct 6140 TACTCTCACAGCACCACCTCTTTGCCAACAAGTTCGACCCCAGCGTTGACGACTACGTCA 6199 Query 108580 TGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTAT 108620 | ||||| || |||||||| || || | |||||||||||| Sbjct 6200 TCCAGTGTTTGGAAGAGTATCTGCGCTACAAGGCCATCTAT 6240 >seq18652 Length=13112 Score = 116 bits (128), Expect = 3e-21 Identities = 227/333 (68%), Gaps = 2/333 (1%) Strand=Plus/Plus Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757 ||||||| ||| || |||||||| || || || |||| || | || ||| | | Sbjct 2718 AAGAAGAAGCAGAATTTCCCATTGCATATTCAATAGTGGCTTATCATAAAATTAATATGC 2777 Query 107758 TTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817 |||| | || ||| || || | ||||| ||||||||| ||||| | || || || Sbjct 2778 TTGAGAGACTTCTGAGAACCATATATGCTCCTCAGAACTATTACTGCATTCATGTTGACA 2837 Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATG 107877 |||||||||||| ||||| | | || |||| ||| || || || | |||| Sbjct 2838 AAAAGTCCCCAGAGTCTTTCTTGGCATCTGTAAAGGGGATTGCATCATGTTTTCATAATG 2897 Query 107878 TCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTG 107937 ||||||| ||||| | |||| || || ||||| || ||| | | || ||||||| Sbjct 2898 TCTTCATTGCCAGCCAATTGGAAAGTGTAGTGTATGCATCATGGAGCCGGGTACAAGCTG 2957 Query 107938 ACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGCCATGGAAGTACTTACTGAAT 107996 |||| ||||| || |||| | || | ||| ||| |||||||||||| | ||| Sbjct 2958 ACCTCAACTGCAT-GAAGGATCTCTATAGGAGGAATGTGAGCTGGAAGTACTTAATCAAT 3016 Query 107997 ACATGCGGGACAGACTTCCCCATAAAGACCAAT 108029 ||||| | || ||||| || ||||||||| Sbjct 3017 CTCTGCGGTATGGATTTCCCAATCAAGACCAAT 3049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347479029536232