Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq29087 107 2e-18 seq174935 89.7 4e-13 >seq29087 Length=41947 Score = 107 bits (118), Expect = 2e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| |||||||||||| || ||| | || |||| Sbjct 34828 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCA 34769 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || ||||| || |||| || ||| || || ||||| | || ||||| ||| | Sbjct 34768 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGA 34709 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||||||||||| ||| || ||||| | Sbjct 34708 TCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCC 34649 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | |||| |||||||||||||| ||||| || Sbjct 34648 CAGTCAAGGTCTTCACAAAGATCTGCATTTT 34618 Score = 107 bits (118), Expect = 2e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| |||||||||||| || ||| | || |||| Sbjct 35056 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCA 34997 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | ||||| || ||||| |||| || ||| || || ||||| | || ||||| ||| | Sbjct 34996 GCTGTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGA 34937 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||||||||||| ||| || ||||| | Sbjct 34936 TCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTYC 34877 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | |||| |||||||| ||||| ||||| Sbjct 34876 CAGTCAAGGTCTTCACRAAGATCTGCAT 34849 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| || || | || ||||| ||||| || ||||| Sbjct 35268 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGTTTGCCCGCGAA 35209 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| || ||| || || ||||| | || ||||| ||| || || ||| || Sbjct 35208 GATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATT 35149 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | ||||||||||| ||| || ||||| || |||| |||||||| Sbjct 35148 CTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCAC 35089 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 35088 AAAGATCTGCAT 35077 >seq174935 Length=570 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| || || | || ||| || |||||||| | || ||||||||| Sbjct 1 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGG 60 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||||||||||| ||| || |||||| Sbjct 61 ATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 120 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || |||| |||||||||||||| ||||| || Sbjct 121 CCGGTCAAGGTCTTCACAAAGATCTGCATTTT 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394179286487428