Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21]
186,068 sequences; 1,520,334,138 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq29087 107 2e-18
seq174935 89.7 4e-13
>seq29087
Length=41947
Score = 107 bits (118), Expect = 2e-18
Identities = 151/211 (72%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188
|||| || || ||| ||||||||| |||||||||||| || ||| | || ||||
Sbjct 34828 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCA 34769
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248
| || || ||||| || |||| || ||| || || ||||| | || ||||| ||| |
Sbjct 34768 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGA 34709
Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308
| || ||| || | | | | |||| | ||||||||||| ||| || ||||| |
Sbjct 34708 TCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCC 34649
Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339
| |||| |||||||||||||| ||||| ||
Sbjct 34648 CAGTCAAGGTCTTCACAAAGATCTGCATTTT 34618
Score = 107 bits (118), Expect = 2e-18
Identities = 149/208 (72%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188
|||| || || ||| ||||||||| |||||||||||| || ||| | || ||||
Sbjct 35056 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCA 34997
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248
| ||||| || ||||| |||| || ||| || || ||||| | || ||||| ||| |
Sbjct 34996 GCTGTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGA 34937
Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308
| || ||| || | | | | |||| | ||||||||||| ||| || ||||| |
Sbjct 34936 TCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTYC 34877
Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336
| |||| |||||||| ||||| |||||
Sbjct 34876 CAGTCAAGGTCTTCACRAAGATCTGCAT 34849
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| |||||||||||| || || | || ||||| ||||| || |||||
Sbjct 35268 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGTTTGCCCGCGAA 35209
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|||| || ||| || || ||||| | || ||||| ||| || || ||| ||
Sbjct 35208 GATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATT 35149
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | | |||| | ||||||||||| ||| || ||||| || |||| ||||||||
Sbjct 35148 CTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCAC 35089
Query 45325 AAAGATTTGCAT 45336
|||||| |||||
Sbjct 35088 AAAGATCTGCAT 35077
>seq174935
Length=570
Score = 89.7 bits (98), Expect = 4e-13
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| ||||| || || | || ||| || |||||||| | || |||||||||
Sbjct 1 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGG 60
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| | ||||||||||| ||| || ||||||
Sbjct 61 ATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 120
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339
|| |||| |||||||||||||| ||||| ||
Sbjct 121 CCGGTCAAGGTCTTCACAAAGATCTGCATTTT 152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394179286487428
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |