Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq7215 132 5e-26 seq177 93.3 4e-14 seq49828 91.5 1e-13 >seq7215 Length=34700 Score = 132 bits (146), Expect = 5e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||||||||| || || || ||||| || | ||| ||||||| |||||||| | Sbjct 16588 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCT 16647 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 ||| ||||||||||| || || || || |||||||| ||||| |||||||||||||| | Sbjct 16648 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 16707 Query 14346 CTATTAATCGTTCTCC 14361 ||| || ||||| || Sbjct 16708 CTACTACACGTTCACC 16723 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| |||||||||| | || | |||||||||||||||||||| ||| Sbjct 15020 GACATCACACCCATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCT 15079 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13992 ||||| || ||||| |||||||| ||||||||||| Sbjct 15080 TCCAGAGAGATATTCTCCATAAAGTCAAATGGATT 15114 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/116 (78%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 14459 TCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14516 ||||||| | ||| ||| || |||||||||||||| ||||||||||| || || |||| Sbjct 18642 TCTTTAGAATCCTT--AATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 18699 Query 14517 TTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCT 14572 | ||||| || ||||| || ||||| ||||| | ||||||| |||||| ||| Sbjct 18700 TCTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 18755 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/116 (78%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 14459 TCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14516 ||||||| | ||| ||| || |||||||||||||| ||||||||||| || || |||| Sbjct 22590 TCTTTAGAATCCTT--AATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 22647 Query 14517 TTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCT 14572 | ||||| || ||||| || ||||| ||||| | ||||||| |||||| ||| Sbjct 22648 TCTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 22703 >seq177 Length=121252 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 |||||||| ||||||||||| || || || || | |||||||| || |||| || || Sbjct 54722 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 54663 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 | ||||||||| || || || | || || ||||| ||||| || || ||||||||||| Sbjct 54662 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGC 54604 >seq49828 Length=5021 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/116 (78%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 14459 TCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14516 ||||||| | ||| ||| || |||||||||||||| ||||||||||| || || |||| Sbjct 4647 TCTTTAGAATCCTT--AATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 4590 Query 14517 TTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCT 14572 | ||||| || ||||| || ||||| ||||| | ||||||| |||||| ||| Sbjct 4589 TCTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 4534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481223736486240