Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq162283 118 9e-22 seq10737 93.3 4e-14 >seq162283 Length=690 Score = 118 bits (130), Expect = 9e-22 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 |||||||||| | | | |||||| || || ||||| || || ||||| ||||| || | Sbjct 650 CCACCTCGTCCTGGCTGGAGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGG 591 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 |||||| || ||||||||| || || ||||| || ||||||||||||||||| |||| Sbjct 590 TGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCG 531 Query 23166 TGCCCGTCTCGACCTGCGACTCGAT 23190 | |||||||| ||| ||||| || Sbjct 530 TCCCCGTCTCCGTCTGAGACTCAAT 506 >seq10737 Length=39522 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| || || ||||| ||||| || |||||||| || || || || | | ||| || | Sbjct 18992 TCATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGTGCCCTCTGCTCTTCCT 18933 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 | ||||||||||| |||| ||| | || || || | |||| ||||| ||||| |||| Sbjct 18932 TCCCGGTGTTCTTCTTCAGATCGAGGAATTCAAAGATGTCCATGTGCCAGGGCTCCAGGT 18873 Query 23472 AAACGGCAAACGCGCCCGGTCTCT 23495 | | ||| || || || ||||||| Sbjct 18872 AGATGGCGAAGGCCCCGGGTCTCT 18849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444729614218560