Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7215 120 4e-22 seq177 93.3 5e-14 seq49828 91.5 2e-13 >seq7215 Length=34700 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||||||||| | || |||||||| || ||||| ||||| || || || || | Sbjct 16588 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCT 16647 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| || || || || || ||||||||||||||||| ||||||||||| | Sbjct 16648 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 16707 Query 33724 C 33724 | Sbjct 16708 C 16708 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33833 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 ||| ||| ||| |||| ||||||||| || | | |||||||||||| ||||||||||| Sbjct 18641 TTCTTTAGAATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 18700 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || ||||| ||||| || || |||||||| | || || || | || |||||| Sbjct 18701 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 18755 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33833 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 ||| ||| ||| |||| ||||||||| || | | |||||||||||| ||||||||||| Sbjct 22589 TTCTTTAGAATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 22648 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || ||||| ||||| || || |||||||| | || || || | || |||||| Sbjct 22649 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 22703 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138 ||| ||||| ||||||| ||||| |||||||| || || ||||| | |||||||||||| Sbjct 26458 CACCTCTTCAGCTGTCCAGAATGAAGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATG 26517 Query 34139 ATATTGGATTGGGAAAATAACAAA 34162 ||||| || || ||||| ||||| Sbjct 26518 GTATTGAATAGGAAAAATGACAAA 26541 >seq177 Length=121252 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| ||||| | ||| || || || || || || ||||||| || | ||| || Sbjct 54722 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 54663 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||||||||||| || || | || || |||||||||||||| || |||||||| ||| Sbjct 54662 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGCA 54603 Query 33726 ATAAGTCTCTCTCC 33739 | | ||| || || Sbjct 54602 ACCACTCTTTCACC 54589 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138 ||| ||||| |||||||| || || |||| |||| || ||||| ||||| || ||| | Sbjct 51408 CACCTCTTCTACTGTCCAGAAAGAAGCCTGAGCCTGCTTGTACATTTTCCATATATCAGG 51349 Query 34139 ATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 |||||||||||||| || ||||||| || ||||| Sbjct 51348 GTATTGGATTGGGAAGATGACAAATCGATGGGGATT 51313 >seq49828 Length=5021 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33833 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 ||| ||| ||| |||| ||||||||| || | | |||||||||||| ||||||||||| Sbjct 4648 TTCTTTAGAATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 4589 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || ||||| ||||| || || |||||||| | || || || | || |||||| Sbjct 4588 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 4534 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138 ||| ||||| ||||||| ||||| |||||||| || || ||||| | |||||||||||| Sbjct 778 CACCTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATG 719 Query 34139 ATATTGGATTGGGAAAATAACAAA 34162 ||||| || || ||||| ||||| Sbjct 718 GTATTGAATAGGAAAAATGACAAA 695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628352738735040