Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq7215 129 5e-25 seq49828 93.3 4e-14 >seq7215 Length=34700 Score = 129 bits (142), Expect = 5e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || || ||||||||||| || | ||| ||||||| |||||||| ||| Sbjct 16590 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCTTT 16649 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||||||||| | ||||| || ||||||||||| ||||| || || || ||||||||| Sbjct 16650 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 16709 Query 11774 ACTACTCTTTCTCC 11787 ||||| | ||| || Sbjct 16710 ACTACACGTTCACC 16723 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 11881 TTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATT 11940 |||| || ||| | | ||| ||||| || | |||||||||||||||||||||||| || Sbjct 18641 TTCTTTAGAATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 18700 Query 11941 TTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 ||||| || || || || ||||||||||| ||||| |||| Sbjct 18701 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTG 18741 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 11881 TTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATT 11940 |||| || ||| | | ||| ||||| || | |||||||||||||||||||||||| || Sbjct 22589 TTCTTTAGAATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 22648 Query 11941 TTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 ||||| || || || || ||||||||||| ||||| |||| Sbjct 22649 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTG 22689 >seq49828 Length=5021 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 11881 TTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATT 11940 |||| || ||| | | ||| ||||| || | |||||||||||||||||||||||| || Sbjct 4648 TTCTTTAGAATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 4589 Query 11941 TTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 ||||| || || || || ||||||||||| ||||| |||| Sbjct 4588 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTG 4548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467435081593920