Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq7215 125 1e-23 seq177 111 2e-19 seq49828 91.5 2e-13 seq10737 84.2 3e-11 >seq7215 Length=34700 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||||||||| || || || ||||| || ||||| ||||| || || || || | Sbjct 16588 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCT 16647 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 16648 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 16707 Query 50102 CAAC 50105 | || Sbjct 16708 CTAC 16711 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 50211 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 50270 ||| ||| ||| |||| ||||||||| || | | |||||||||||| ||||||||||| Sbjct 18641 TTCTTTAGAATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 18700 Query 50271 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || ||||| ||||| || || |||||||| | || || || | || |||||| Sbjct 18701 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 18755 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 50211 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 50270 ||| ||| ||| |||| ||||||||| || | | |||||||||||| ||||||||||| Sbjct 22589 TTCTTTAGAATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 22648 Query 50271 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || ||||| ||||| || || |||||||| | || || || | || |||||| Sbjct 22649 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 22703 >seq177 Length=121252 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| ||||| ||||| ||||| || || || || ||||||| || | ||| || Sbjct 54722 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 54663 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||||||||||| ||||| | ||||| |||||||||||||| || || ||||| ||| Sbjct 54662 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGCA 54603 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| || || Sbjct 54602 ACCACTCTTTCACC 54589 >seq49828 Length=5021 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 50211 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 50270 ||| ||| ||| |||| ||||||||| || | | |||||||||||| ||||||||||| Sbjct 4648 TTCTTTAGAATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 4589 Query 50271 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || ||||| ||||| || || |||||||| | || || || | || |||||| Sbjct 4588 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 4534 >seq10737 Length=39522 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| ||||| || || || || || | || || || |||||||| | Sbjct 26828 TCCAGCCGTAGAAGTGCATGCTGGTCAGCTTCCCGTAGTTGGGCTCCGCAATATGGATGT 26769 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| ||| || || || ||||||||||| |||| ||| || ||||| || | || |||| Sbjct 26768 TCAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCAGCGGCCATCTTCAGGACGGTCT 26709 Query 78905 TTTGTGGAATTTCCCA 78920 | || | || ||||| Sbjct 26708 TCTGGGAGATCTCCCA 26693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716598214511520